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Phylogeny and associated unweighted network graph for a simulated epidemic.

By Luc Villandre (849332), David A. Stephens (322766), Aurelie Labbe (2563384), Huldrych F. Günthard (173082), Roger Kouyos (178908) and Tanja Stadler (118822)

Abstract

<p>Branch colour indicates on which island transmission and evolution takes place, while tip label colour indicates cluster membership based on snipping the WPGMA dendrogram at height 0.007. Only islands with at least one infected vertex are displayed. Vertex and edge colours are matched with tip label and branch colours, respectively. A white vertex with a teal frame is infected, but undiagnosed. A white vertex with frame color matching that of the island is uninfected.</p

Topics: Biotechnology, Evolutionary Biology, Ecology, Cancer, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, contact networks, transmission cluster membership indices, Background Transmission patterns, Simple Sexual Contact Networks, contact network communities, transmission clusters, epidemic, MSM, Phylogenetic Transmission Clusters, HIV, phylogenetic transmission clusters, STI
Year: 2016
DOI identifier: 10.1371/journal.pone.0148459.g002
OAI identifier: oai:figshare.com:article/1643941
Provided by: FigShare
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