INDIVIDUAL TREE SEGMENTATION FROM BLS DATA BASED ON GRAPH AUTOENCODER

In the last two decades, Light detection and ranging (LiDAR) has been widely employed in forestry applications. Individual tree segmentation is essential to forest management because it is a prerequisite to tree reconstruction and biomass estimation. This paper introduces a general framework to extract individual trees from the LiDAR point cloud based on a graph link prediction problem. First, an undirected graph is generated from the point cloud based on K-nearest neighbors (KNN). Then, this graph is used to train a convolutional autoencoder that extracts the node embeddings to reconstruct the graph. Finally, the individual trees are defined by the separate sets of connected nodes of the reconstructed graph. A key advantage of the proposed method is that no further knowledge about tree or forest structure is required. Seven sample plots from a plantation forest with poplar and dawn redwood species have been employed in the experiments. Though the precision of the experimental results is up to 95 % for poplar species and 92 % for dawn redwood trees, the method still requires more investigations on natural forest types with mixed tree species

Benchmarking airborne laser scanning tree segmentation algorithms in broadleaf forests shows high accuracy only for canopy trees

Individual tree segmentation from airborne laser scanning data is a longstanding and important challenge in forest remote sensing. Tree segmentation algorithms are widely available, but robust intercomparison studies are rare due to the difficulty of obtaining reliable reference data. Here we provide a benchmark data set for temperate and tropical broadleaf forests generated from labelled terrestrial laser scanning data. We compared the performance of four widely used tree segmentation algorithms against this benchmark data set. All algorithms performed reasonably well on the canopy trees. The point cloud-based algorithm AMS3D (Adaptive Mean Shift 3D) had the highest overall accuracy, closely followed by the 2D raster based region growing algorithm Dalponte2016 +. However, all algorithms failed to accurately segment the understory trees. This result was consistent across both forest types. This study emphasises the need to assess tree segmentation algorithms directly using benchmark data, rather than comparing with forest indices such as biomass or the number and size distribution of trees. We provide the first openly available benchmark data set for tropical forests and we hope future studies will extend this work to other regions

Ground Profile Recovery from Aerial 3D LiDAR-based Maps

The paper presents the study and implementation of the ground detection methodology with filtration and removal of forest points from LiDAR-based 3D point cloud using the Cloth Simulation Filtering (CSF) algorithm. The methodology allows to recover a terrestrial relief and create a landscape map of a forestry region. As the proof-of-concept, we provided the outdoor flight experiment, launching a hexacopter under a mixed forestry region with sharp ground changes nearby Innopolis city (Russia), which demonstrated the encouraging results for both ground detection and methodology robustness.Comment: 8 pages, FRUCT-2019 conferenc

Heuristic generation of multispectral labeled point cloud datasets for deep learning models

Abstract. Deep Learning (DL) models need big enough datasets for training, especially those that deal with point clouds. Artificial generation of these datasets can complement the real ones by improving the learning rate of DL architectures. Also, Light Detection and Ranging (LiDAR) scanners can be studied by comparing its performing with artificial point clouds. A methodology for simulate LiDAR-based artificial point clouds is presented in this work in order to get train datasets already labelled for DL models. In addition to the geometry design, a spectral simulation will be also performed so that all points in each cloud will have its 3 dimensional coordinates (x, y, z), a label designing which category it belongs to (vegetation, traffic sign, road pavement, …) and an intensity estimator based on physical properties as reflectance.Ministerio de Ciencia, Innovación y Universidades | Ref. PCI2020-120705-

Individual tree point clouds and tree measurements from multi-platform laser scanning in German forests

Laser scanning from different acquisition platforms enables the collection of 3D point clouds from different perspectives and with varying resolutions. These point clouds allow us to retrieve detailed information on the individual tree and forest structure. We conducted airborne laser scanning (ALS), uncrewed aerial vehicle (UAV)-borne laser scanning (ULS) and terrestrial laser scanning (TLS) in two German mixed forests with species typical of central Europe. We provide the spatially overlapping, georeferenced point clouds for 12 forest plots. As a result of individual tree extraction, we furthermore present a comprehensive database of tree point clouds and corresponding tree metrics. Tree metrics were derived from the point clouds and, for half of the plots, also measured in the field. Our dataset may be used for the creation of 3D tree models for radiative transfer modeling or lidar simulation studies or to fit allometric equations between point cloud metrics and forest inventory variables. It can further serve as a benchmark dataset for different algorithms and machine learning tasks, in particular automated individual tree segmentation, tree species classification or forest inventory metric prediction. The dataset and supplementary metadata are available for download, hosted by the PANGAEA data publisher at https://doi.org/10.1594/PANGAEA.942856 (Weiser et al., 2022a)

A fully automatic forest parameters extraction at single-tree level: a comparison of MLS and TLS applications

Forests are vital for ecological, economic, and social reasons, and adopting sustainable forest management practices is necessary. While traditional forest monitoring techniques provide detailed data, they are time-consuming; conversely, geomatic techniques can provide more detailed data for forest resource management. This study aims to assess the suitability of Mobile Mapping Systems (MMS) with simultaneous localisation and mapping (SLAM) technology for precision forestry purposes in challenging environments. We compared the performance of MMS data with Terrestrial Laser Scanning (TLS) data and evaluated the Forest Structural Complexity Tool (FSCT), which was developed for TLS datasets, on MMS data. The case study area is a highly sloped coniferous forest in the Italian Alps affected by a severe fire in 2017. Data were processed using a fully automated open-source Python tool that detects each tree's position, Diameter at Breast Height (DBH), and height. The validation procedure was conducted with respect to the TLS point cloud manually segmented. The results show that using MMS with SLAM technology is suitable for precision forestry purposes in challenging environments and that FSCT performs well on MMS data

lidR : an R package for analysis of Airborne Laser Scanning (ALS) data

Airborne laser scanning (ALS) is a remote sensing technology known for its applicability in natural resources management. By quantifying the three-dimensional structure of vegetation and underlying terrain using laser technology, ALS has been used extensively for enhancing geospatial knowledge in the fields of forestry and ecology. Structural descriptions of vegetation provide a means of estimating a range of ecologically pertinent attributes, such as height, volume, and above-ground biomass. The efficient processing of large, often technically complex datasets requires dedicated algorithms and software. The continued promise of ALS as a tool for improving ecological understanding is often dependent on user-created tools, methods, and approaches. Due to the proliferation of ALS among academic, governmental, and private-sector communities, paired with requirements to address a growing demand for open and accessible data, the ALS community is recognising the importance of free and open-source software (FOSS) and the importance of user-defined workflows. Herein, we describe the philosophy behind the development of the lidR package. Implemented in the R environment with a C/C++ backend, lidR is free, open-source and cross-platform software created to enable simple and creative processing workflows for forestry and ecology communities using ALS data. We review current algorithms used by the research community, and in doing so raise awareness of current successes and challenges associated with parameterisation and common implementation approaches. Through a detailed description of the package, we address the key considerations and the design philosophy that enables users to implement user-defined tools. We also discuss algorithm choices that make the package representative of the ‘state-of-the-art' and we highlight some internal limitations through examples of processing time discrepancies. We conclude that the development of applications like lidR are of fundamental importance for developing transparent, flexible and open ALS tools to ensure not only reproducible workflows, but also to offer researchers the creative space required for the progress and development of the discipline

FOR-instance: a UAV laser scanning benchmark dataset for semantic and instance segmentation of individual trees

The FOR-instance dataset (available at https://doi.org/10.5281/zenodo.8287792) addresses the challenge of accurate individual tree segmentation from laser scanning data, crucial for understanding forest ecosystems and sustainable management. Despite the growing need for detailed tree data, automating segmentation and tracking scientific progress remains difficult. Existing methodologies often overfit small datasets and lack comparability, limiting their applicability. Amid the progress triggered by the emergence of deep learning methodologies, standardized benchmarking assumes paramount importance in these research domains. This data paper introduces a benchmarking dataset for dense airborne laser scanning data, aimed at advancing instance and semantic segmentation techniques and promoting progress in 3D forest scene segmentation. The FOR-instance dataset comprises five curated and ML-ready UAV-based laser scanning data collections from diverse global locations, representing various forest types. The laser scanning data were manually annotated into individual trees (instances) and different semantic classes (e.g. stem, woody branches, live branches, terrain, low vegetation). The dataset is divided into development and test subsets, enabling method advancement and evaluation, with specific guidelines for utilization. It supports instance and semantic segmentation, offering adaptability to deep learning frameworks and diverse segmentation strategies, while the inclusion of diameter at breast height data expands its utility to the measurement of a classic tree variable. In conclusion, the FOR-instance dataset contributes to filling a gap in the 3D forest research, enhancing the development and benchmarking of segmentation algorithms for dense airborne laser scanning data

Review on Region-Based Segmentation Using Watershed and Region Growing Techniques and their Applications in Different Fields

In digital image processing and computer vision, segmentation operation for an image refers to dividing an image into multiple image segments, and the significant purpose of segmentation operation is to depict an image in a way so that the analysis process of the objects of interest is easier and more accurate. The region-based segmentation scheme act for finding similarities between adjacent pixels to detect each region that constructs the image. Similarity scales have based on different features, in a grayscale image, the scale may be referred to as textures and other spatial appearances, and also the variance in intensity of a region and so on. Significantly, many applications in different fields involved region-based segmentation for instance remote sensing, medical application, and others for recognizing interesting objects in an image. In this paper, two techniques for segmentation operation in region-based which are region growing and watershed are reviewed