Shangri-La: a medical case-based retrieval tool

Large amounts of medical visual data are produced in hospitals daily and made available continuously via publications in the scientific literature, representing the medical knowledge. However, it is not always easy to find the desired information and in clinical routine the time to fulfil an information need is often very limited. Information retrieval systems are a useful tool to provide access to these documents/images in the biomedical literature related to information needs of medical professionals. Shangri–La is a medical retrieval system that can potentially help clinicians to make decisions on difficult cases. It retrieves articles from the biomedical literature when querying a case description and attached images. The system is based on a multimodal retrieval approach with a focus on the integration of visual information connected to text. The approach includes a query–adaptive multimodal fusion criterion that analyses if visual features are suitable to be fused with text for the retrieval. Furthermore, image modality information is integrated in the retrieval step. The approach is evaluated using the ImageCLEFmed 2013 medical retrieval benchmark and can thus be compared to other approaches. Results show that the final approach outperforms the best multimodal approach submitted to ImageCLEFmed 2013

Fusion Techniques in Biomedical Information Retrieval

For difficult cases clinicians usually use their experience and also the information found in textbooks to determine a diagnosis. Computer tools can help them supply the relevant information now that much medical knowledge is available in digital form. A biomedical search system such as developed in the Khresmoi project (that this chapter partially reuses) has the goal to fulfil information needs of physicians. This chapter concentrates on information needs for medical cases that contain a large variety of data, from free text, structured data to images. Fusion techniques will be compared to combine the various information sources to supply cases similar to an example case given. This can supply physicians with answers to problems similar to the one they are analyzing and can help in diagnosis and treatment planning

Colour-based image retrieval algorithms based on compact colour descriptors and dominant colour-based indexing methods

Content based image retrieval (CBIR) is reported as one of the most active research areas in the last two decades, but it is still young. Three CBIR’s performance problem in this study is inaccuracy of image retrieval, high complexity of feature extraction, and degradation of image retrieval after database indexing. This situation led to discrepancies to be applied on limited-resources devices (such as mobile devices). Therefore, the main objective of this thesis is to improve performance of CBIR. Images’ Dominant Colours (DCs) is selected as the key contributor for this purpose due to its compact property and its compatibility with the human visual system. Semantic image retrieval is proposed to solve retrieval inaccuracy problem by concentrating on the images’ objects. The effect of image background is reduced to provide more focus on the object by setting weights to the object and the background DCs. The accuracy improvement ratio is raised up to 50% over the compared methods. Weighting DCs framework is proposed to generalize this technique where it is demonstrated by applying it on many colour descriptors. For reducing high complexity of colour Correlogram in terms of computations and memory space, compact representation of Correlogram is proposed. Additionally, similarity measure of an existing DC-based Correlogram is adapted to improve its accuracy. Both methods are incorporated to produce promising colour descriptor in terms of time and memory space complexity. As a result, the accuracy is increased up to 30% over the existing methods and the memory space is decreased to less than 10% of its original space. Converting the abundance of colours into a few DCs framework is proposed to generalize DCs concept. In addition, two DC-based indexing techniques are proposed to overcome time problem, by using RGB and perceptual LUV colour spaces. Both methods reduce the search space to less than 25% of the database size with preserving the same accuracy