Diffusion map for clustering fMRI spatial maps extracted by independent component analysis

Functional magnetic resonance imaging (fMRI) produces data about activity inside the brain, from which spatial maps can be extracted by independent component analysis (ICA). In datasets, there are n spatial maps that contain p voxels. The number of voxels is very high compared to the number of analyzed spatial maps. Clustering of the spatial maps is usually based on correlation matrices. This usually works well, although such a similarity matrix inherently can explain only a certain amount of the total variance contained in the high-dimensional data where n is relatively small but p is large. For high-dimensional space, it is reasonable to perform dimensionality reduction before clustering. In this research, we used the recently developed diffusion map for dimensionality reduction in conjunction with spectral clustering. This research revealed that the diffusion map based clustering worked as well as the more traditional methods, and produced more compact clusters when needed.Comment: 6 pages. 8 figures. Copyright (c) 2013 IEEE. Published at 2013 IEEE International Workshop on Machine Learning for Signal Processin

Revealing spatio-spectral electroencephalographic dynamics of musical mode and tempo perception by independent component analysis.

BackgroundMusic conveys emotion by manipulating musical structures, particularly musical mode- and tempo-impact. The neural correlates of musical mode and tempo perception revealed by electroencephalography (EEG) have not been adequately addressed in the literature.MethodThis study used independent component analysis (ICA) to systematically assess spatio-spectral EEG dynamics associated with the changes of musical mode and tempo.ResultsEmpirical results showed that music with major mode augmented delta-band activity over the right sensorimotor cortex, suppressed theta activity over the superior parietal cortex, and moderately suppressed beta activity over the medial frontal cortex, compared to minor-mode music, whereas fast-tempo music engaged significant alpha suppression over the right sensorimotor cortex.ConclusionThe resultant EEG brain sources were comparable with previous studies obtained by other neuroimaging modalities, such as functional magnetic resonance imaging (fMRI) and positron emission tomography (PET). In conjunction with advanced dry and mobile EEG technology, the EEG results might facilitate the translation from laboratory-oriented research to real-life applications for music therapy, training and entertainment in naturalistic environments

Thalamo-cortical network activity between migraine attacks. Insights from MRI-based microstructural and functional resting-state network correlation analysis

BACKGROUND: Resting state magnetic resonance imaging allows studying functionally interconnected brain networks. Here we were aimed to verify functional connectivity between brain networks at rest and its relationship with thalamic microstructure in migraine without aura (MO) patients between attacks. METHODS: Eighteen patients with untreated MO underwent 3 T MRI scans and were compared to a group of 19 healthy volunteers (HV). We used MRI to collect resting state data among two selected resting state networks, identified using group independent component (IC) analysis. Fractional anisotropy (FA) and mean diffusivity (MD) values of bilateral thalami were retrieved from a previous diffusion tensor imaging study on the same subjects and correlated with resting state ICs Z-scores. RESULTS: In comparison to HV, in MO we found significant reduced functional connectivity between the default mode network and the visuo-spatial system. Both HV and migraine patients selected ICs Z-scores correlated negatively with FA values of the thalamus bilaterally. CONCLUSIONS: The present results are the first evidence supporting the hypothesis that an abnormal resting within networks connectivity associated with significant differences in baseline thalamic microstructure could contribute to interictal migraine pathophysiology

Association between resting-state functional connectivity, glucose metabolism and task-related activity of neural networks

The brain is organized into several large-scale functional networks. Such networks are primarily characterized by intrinsic functional connectivity, i.e. temporally synchronous activity between the different brain regions of a network. The functional connectivity of networks can be identified via functional MRI during resting state, i.e. without engaging the subject in a particular task. Resting-state fMRI is thus less demanding on the subject and therefore of particular interest from a clinical point of view to detect alterations in brain function. Applied to neurodegenerative disease including Alzheimer’s disease, resting-state fMRI has shown alterations in several resting-state networks, suggesting that basic network function is altered in AD. However, the interpretation of alterations in resting-state fMRI connectivity is inherently limited since no cognitive states are explicitly expressed during fMRI. In this regard, we aimed to elucidate how resting-state fMRI connectivity relates to 1) cognition-related brain activity and 2) markers of pathologically altered brain function in AD. In order to understand at a more basic level the association between resting-state and task-related fMRI, we first examined, in a group of elderly healthy subjects, the association between functional connectivity of major networks assessed during resting-state fMRI with those acquired during memory-task related fMRI, in the same individuals. Secondly, in order to assess whether alterations in AD are associated with already well-established markers of pathological brain function in AD, we compared resting-state fMRI functional network connectivity with that in FDG-PET metabolism in AD. Project 1: We investigated the association between functional connectivity acquired during rest and the level of activation obtained during an episodic memory task that included the encoding and forced-choice recognition of face-name pairs in elderly cognitively normal subjects. Independent component analysis (ICA) was used to identify major resting-state networks in the brain. Next, we applied ICA to the task-fMRI data to determine the components (networks) that were significantly associated with the task regressors of successful vs unsuccessful learning or recognition trials. Spatial correlation analysis between the resulting extracted resting-state and task-related fMRI components showed a spatial match in several components such as medial temporal lobe centered components and posterior components. However, apart from the spatial correspondence, the level of resting state functional connectivity did not predict the level of task-related functional connectivity in spatially matching components. Together these results suggested that particular resting-state networks are activated during a memory task, however, the level of baseline connectivity does not predict to what extent a network becomes activated during a task. Future studies may assess whether pathological resting-state connectivity predicts altered task-related connectivity in the same networks in AD. Project 2: We examined the association between resting-state fMRI functional connectivity within major functional networks and FDG-PET metabolism in those networks, assessed in elderly healthy controls, subjects with prodromal AD (mild cognitive impairment and amyloid PET biomarker confirmed AD etiology) and AD dementia. We found that FDG-PET was generally reduced in all networks in the course of AD. The main finding was that lower network functional connectivity was associated with lower FDG-PET uptake in the Default mode network and fronto-parietal attention network across the whole group and specifically in prodromal AD, suggesting that both modalities are associated in higher networks affected in the course of AD. These results provide insightful comprehension of the hypometabolism patterns that are typically found in AD

Time course of information processing in visual and haptic object classification

Peer reviewedPublisher PD

Correspondence Between Resting-State and Episodic Memory-Task Related Networks in Elderly Subjects

Resting-state fMRI studies demonstrated temporally synchronous fluctuations in brain activity among ensembles of brain regions, suggesting the existence of intrinsic functional networks. A spatial match between some of the resting-state networks and regional brain activation during cognitive tasks has been noted, suggesting that resting-state networks support particular cognitive abilities. However, the spatial match and predictive value of any resting-state network and regional brain activation during episodic memory is only poorly understood. In order to address this research gap, we obtained fMRI acquired both during rest and a face-name association task in 38 healthy elderly subjects. In separate independent component analyses, networks of correlated brain activity during rest or the episodic memory task were identified. For the independent components identified for task-based fMRI, the design matrix of successful encoding or retrieval trials was regressed against the time course of each of the component to identify significantly activated networks. Spatial regression was used to assess the match of resting-state networks against those related to successful memory encoding or retrieval. We found that resting-state networks covering the medial temporal, middle temporal, and frontal areas showed increased activity during successful encoding. Resting-state networks located within posterior brain regions showed increased activity during successful recognition. However, the level of resting-state network connectivity was not predictive of the task-related activity in these networks. These results suggest that a circumscribed number of functional networks detectable during rest become engaged during successful episodic memory. However, higher intrinsic connectivity at rest may not translate into higher network expression during episodic memory