Maize in China: Production Systems, Constraints, and Research Priorities

Crop Production/Industries, Research and Development/Tech Change/Emerging Technologies,

Potential of tropical maize populations for improving an elite maize hybrid

Identifying exotic maize (Zea mays L) populations possessing favorable new alleles lacking in local elite hybrids is an important strategy for improving maize hybrids. Selection of an appropriate breeding method will increase the chance of successfully transferring these favorable new alleles into elite inbred lines of local hybrids. The objec¬tives of this study were to: (i) evaluate 14 maize populations from CIMMYT and identify those containing favorable alleles for grain yield, ear length, ear diameter, kernel length, plant height, and ear height that are lacking in a local super hybrid [Jidan261 (W9706 × Ji853)], and to (ii) determine which inbred parent should be improved. These re¬sults showed that the populations Pob43, Pob501, and La Posta had positive and significant numbers of favorable alleles not found in hybrid W9706 × Ji853 that could be used for simultaneous improvement of its grain yield, ear length, and kernel length, and that population QPM-Y was also a good donor for improvement of ear diameter and kernel length in the hybrid. Based on allele frequencies in the two inbred lines and the donor population, when the populations Pob43, La Posta, Pob501, and QPM-Y were used as donors, inbred line W9706 would be improved by selfing the F1 of the cross W9706 × donor population. These results suggested that CIMMYT germplasm has potential to improve temperate elite hybrids. The relationship between GCA and SCA from a previous study and the parameters obtained from the Dudley method are discussed. The results showed that the values of Lplμ’ esti¬mates obtained by applying the Dudley method had the same trend as GCA effects for grain yield but a less clear trend for ear length, while the trends in the relationship value were reversed for SCA between these populations and Lancaster-derived lines

Genetic characterization and linkage disequilibrium mapping of resistance to gray leaf spot in maize (Zea mays L.)

AbstractGray leaf spot (GLS), caused by Cercospora zeae-maydis, is an important foliar disease of maize (Zea mays L.) worldwide, resistance to which is controlled by multiple quantitative trait loci (QTL). To gain insights into the genetic architecture underlying the resistance to this disease, an association mapping population consisting of 161 inbred lines was evaluated for resistance to GLS in a plant pathology nursery at Shenyang in 2010 and 2011. Subsequently, a genome-wide association study, using 41,101 single-nucleotide polymorphisms (SNPs), identified 51 SNPs significantly (P<0.001) associated with GLS resistance, which could be converted into 31 QTL. In addition, three candidate genes related to plant defense were identified, including nucleotide-binding-site/leucine-rich repeat, receptor-like kinase genes similar to those involved in basal defense. Two genic SNPs, PZE-103142893 and PZE-109119001, associated with GLS resistance in chromosome bins 3.07 and 9.07, can be used for marker-assisted selection (MAS) of GLS resistance. These results provide an important resource for developing molecular markers closely linked with the target trait, enhancing breeding efficiency

HTRA1 variant increases risk to neovascular age-related macular degeneration in Chinese population

AbstractAge-related macular degeneration (AMD) is a leading cause of irreversible visual impairment in the world. Advanced AMD can be divided into wet AMD (choroidal neovascularization) and dry AMD (geographic atrophy, GA). Drusen is characterized by deposits in the macula without visual loss and is an early AMD sign in the Caucasian population. rs11200638 in the promoter of HTRA1 has recently been shown to increases the risk for wet AMD in both Caucasian and Hong Kong Chinese populations. In order to replicate these results in a different cohort, we genotyped rs11200638 for 164 Chinese patients (90 wet AMD and 74 drusen) and 106 normal controls in a Han Mainland Chinese cohort. The genotypes were compared using chi square analysis for an additive allelic model. rs11200638 was significantly associated with wet AMD (p=5.00×10−12). Unlike in the Caucasian population, the risk allele of rs11200638 was not associated with drusen in our Chinese population. These findings confirm the association of HTRA1 with wet AMD

Comparison of disease resistance of maize varieties from the 1950s to the 2000s in China

The objective of this investigation was to analyze trends in diseases resistance along with genetic gain. Experimental materials consisted of maize varieties selected from each decade beginning with the 1950s. These varieties were evaluated for resistance to maize dwarf mosaic virus (MDMV), maize rough dwarf virus (MRDV), common smut disease (CSD) and head smut disease (HSD) in several different locations. Artificial inoculation was adopted for infection with MDMV and HSD, whereas natural infection was used for infection MRDV and CSD. Results indicated that resistance of the newer varieties to MDMV, CSD, and HSD was greater than that of older varieties, but the correlation to decades was not significant. To date, no variety tested in China has shown resistance to MRDV, which is likely due to a lack of maize germplasm resources resistant to MRDV in China. So the next goal will be to import new germplasm resources and select resistant germplasm as the basis of breeding resistant varieties

Exome Sequencing Identifies ZNF644 Mutations in High Myopia

Myopia is the most common ocular disorder worldwide, and high myopia in particular is one of the leading causes of blindness. Genetic factors play a critical role in the development of myopia, especially high myopia. Recently, the exome sequencing approach has been successfully used for the disease gene identification of Mendelian disorders. Here we show a successful application of exome sequencing to identify a gene for an autosomal dominant disorder, and we have identified a gene potentially responsible for high myopia in a monogenic form. We captured exomes of two affected individuals from a Han Chinese family with high myopia and performed sequencing analysis by a second-generation sequencer with a mean coverage of 30× and sufficient depth to call variants at ∼97% of each targeted exome. The shared genetic variants of these two affected individuals in the family being studied were filtered against the 1000 Genomes Project and the dbSNP131 database. A mutation A672G in zinc finger protein 644 isoform 1 (ZNF644) was identified as being related to the phenotype of this family. After we performed sequencing analysis of the exons in the ZNF644 gene in 300 sporadic cases of high myopia, we identified an additional five mutations (I587V, R680G, C699Y, 3′UTR+12 C>G, and 3′UTR+592 G>A) in 11 different patients. All these mutations were absent in 600 normal controls. The ZNF644 gene was expressed in human retinal and retinal pigment epithelium (RPE). Given that ZNF644 is predicted to be a transcription factor that may regulate genes involved in eye development, mutation may cause the axial elongation of eyeball found in high myopia patients. Our results suggest that ZNF644 might be a causal gene for high myopia in a monogenic form

Genome-Wide Identification of MicroRNAs in Response to Low Nitrate Availability in Maize Leaves and Roots

BACKGROUND: Nitrate is the major source of nitrogen available for many crop plants and is often the limiting factor for plant growth and agricultural productivity especially for maize. Many studies have been done identifying the transcriptome changes under low nitrate conditions. However, the microRNAs (miRNAs) varied under nitrate limiting conditions in maize has not been reported. MiRNAs play important roles in abiotic stress responses and nutrient deprivation. METHODOLOGY/PRINCIPAL FINDINGS: In this study, we used the SmartArray™ and GeneChip® microarray systems to perform a genome-wide search to detect miRNAs responding to the chronic and transient nitrate limiting conditions in maize. Nine miRNA families (miR164, miR169, miR172, miR397, miR398, miR399, miR408, miR528, and miR827) were identified in leaves, and nine miRNA families (miR160, miR167, miR168, miR169, miR319, miR395, miR399, miR408, and miR528) identified in roots. They were verified by real time stem loop RT-PCR, and some with additional time points of nitrate limitation. The miRNAs identified showed overlapping or unique responses to chronic and transient nitrate limitation, as well as tissue specificity. The potential target genes of these miRNAs in maize were identified. The expression of some of these was examined by qRT-PCR. The potential function of these miRNAs in responding to nitrate limitation is described. CONCLUSIONS/SIGNIFICANCE: Genome-wide miRNAs responding to nitrate limiting conditions in maize leaves and roots were identified. This provides an insight into the timing and tissue specificity of the transcriptional regulation to low nitrate availability in maize. The knowledge gained will help understand the important roles miRNAs play in maize responding to a nitrogen limiting environment and eventually develop strategies for the improvement of maize genetics