47 research outputs found

    ELABORATE MOST PREDOMINANT DISEASES AND COMPLAINS THAT PRESCRIBED PANCHAKARMA IN MEDICAL TOURISM DOWN SOUTH OF SRILANKA

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    Medical Tourism refers to the rapidly growing practice of travelling across international borders to obtain healthcare. Quite apart from its tourism appeal Sri Lanka also boasts the highest literacy rate in the region and a strong heritage in Ayurveda medicinal treatments, adding to the countrys appeal as a top Asian destination for medical tourism. Ayurveda is as much ancient as the human civilization. The concept has inherited many an ideology along the passage of time. In Ayurvedic therapy, the physician diagnoses the root of the cause and treats it accordingly. Various factors which cause the diseases can be reversed or minimized using Ayurvedic treatment. And for thousands of years, the most popular method used to restore and rejuvenate tired bodies and weary souls has been Ayurveda. The main objectives were investigating predominant native, Age, gender and diseases which were instigated in Ayurveda treatments. In this survey, chosen genuine Panchakarma treatment clinic in Suriyalanka Ayurveda beach hotel at Matara (down south of Srilanka). Selected Group included 216 guests. Clinical details were extracted from individual clinical case records this clinic.Germans (93.98%), Russians (3.70%), British (0.92%), Americans (0.46%), Others (0.92%) are predominant natives. The leading gender was Female (72.68%) and top Age group was 50-60 years (32.40%). Details of analyzed shows Germans are the most predominant in Pancha karma curing. Females are most attracted gender to Ayurveda. Middle ages are most instigated age group to Ayurveda. Rejuvenation, Weight reduction, Burnout Syndrome (Excessive stress), Hyperlipidemia, Pre-menopausal syndrome, Skin diseases, Joint pains, the most predominant diseases and occasions prescribe Ayurveda Panchakarma in down south of Sri Lanka

    Towards Efficient Scoring of Student-generated Long-form Analogies in STEM

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    Switching from an analogy pedagogy based on comprehension to analogy pedagogy based on production raises an impractical manual analogy scoring problem. Conventional symbol-matching approaches to computational analogy evaluation focus on positive cases, and challenge computational feasibility. This work presents the Discriminative Analogy Features (DAF) pipeline to identify the discriminative features of strong and weak long-form text analogies. We introduce four feature categories (semantic, syntactic, sentiment, and statistical) used with supervised vector-based learning methods to discriminate between strong and weak analogies. Using a modestly sized vector of engineered features with SVM attains a 0.67 macro F1 score. While a semantic feature is the most discriminative, out of the top 15 discriminative features, most are syntactic. Combining these engineered features with an ELMo-generated embedding still improves classification relative to an embedding alone. While an unsupervised K-Means clustering-based approach falls short, similar hints of improvement appear when inputs include the engineered features used in supervised learning

    Allele Frequency–Based and Polymorphism-Versus-Divergence Indices of Balancing Selection in a New Filtered Set of Polymorphic Genes in Plasmodium falciparum

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    Signatures of balancing selection operating on specific gene loci in endemic pathogens can identify candidate targets of naturally acquired immunity. In malaria parasites, several leading vaccine candidates convincingly show such signatures when subjected to several tests of neutrality, but the discovery of new targets affected by selection to a similar extent has been slow. A small minority of all genes are under such selection, as indicated by a recent study of 26 Plasmodium falciparum merozoite-stage genes that were not previously prioritized as vaccine candidates, of which only one (locus PF10_0348) showed a strong signature. Therefore, to focus discovery efforts on genes that are polymorphic, we scanned all available shotgun genome sequence data from laboratory lines of P. falciparum and chose six loci with more than five single nucleotide polymorphisms per kilobase (including PF10_0348) for in-depth frequency–based analyses in a Kenyan population (allele sample sizes >50 for each locus) and comparison of Hudson–Kreitman–Aguade (HKA) ratios of population diversity (π) to interspecific divergence (K) from the chimpanzee parasite Plasmodium reichenowi. Three of these (the msp3/6-like genes PF10_0348 and PF10_0355 and the surf4.1 gene PFD1160w) showed exceptionally high positive values of Tajima's D and Fu and Li's F indices and have the highest HKA ratios, indicating that they are under balancing selection and should be prioritized for studies of their protein products as candidate targets of immunity. Combined with earlier results, there is now strong evidence that high HKA ratio (as well as the frequency-independent ratio of Watterson's θ/K) is predictive of high values of Tajima's D. Thus, the former offers value for use in genome-wide screening when numbers of genome sequences within a species are low or in combination with Tajima's D as a 2D test on large population genomic samples

    Building a needs-based curriculum in data science and artificial intelligence: case studies in Indonesia, Sri Lanka, and Thailand

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    Indonesia and Thailand are middle-income countries within the South-East Asia region. They have well-established and growing higher education systems, increasingly focused on quality improvement. However, they fall behind regional leaders in educating people who design, develop, deploy and train data science and artificial intelligence (DS&AI) based technology, as evident from the technological market, regionally dominated by Singapore and Malaysia, while the region as a whole is far behind China. A similar situation holds also for Sri Lanka, in the South Asia region technologically dominated by India. In this paper, we describe the design of a master's level curriculum in data science and artificial intelligence using European experience on building such curricula. The design of such a curriculum is a nontrivial exercise because there is a constant trade-off between having a sufficiently broad academic curriculum and adequately meeting regional needs, including those of industrial stakeholders. In fact, findings from a gap analysis and assessment of needs from three case studies in Indonesia, Sri Lanka, and Thailand comprise the most significant component of our curriculum development process.The authors would like to thank the European Union Erasmus+ programme which provided funding through the Capacity Building Higher Education project on Curriculum Development in Data Science and Artificial Intelligence, registered under the reference number 599600-EPP-1-2018-1-TH-EPPKA2-CBHE-JP

    Disruption of a mitochondrial protease machinery in Plasmodium falciparum is an intrinsic signal for parasite cell death

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    The ATP-dependent ClpQY protease system in Plasmodium falciparum is a prokaryotic machinery in the parasite. In the present study, we have identified the complete ClpQY system in P. falciparum and elucidated its functional importance in survival and growth of asexual stage parasites. We characterized the interaction of P. falciparum ClpQ protease (PfClpQ) and PfClpY ATPase components, and showed that a short stretch of residues at the C terminus of PfClpY has an important role in this interaction; a synthetic peptide corresponding to this region antagonizes this interaction and interferes with the functioning of this machinery in the parasite. Disruption of ClpQY function by this peptide caused hindrance in the parasite growth and maturation of asexual stages of parasites. Detailed analyses of cellular effects in these parasites showed features of apoptosis-like cell death. The peptide-treated parasites showed mitochondrial dysfunction and loss of mitochondrial membrane potential. Dysfunctioning of mitochondria initiated a cascade of reactions in parasites, including activation of VAD–FMK-binding proteases and nucleases, which resulted in apoptosis-like cell death. These results show functional importance of mitochondrial proteases in the parasite and involvement of mitochondria in programmed cell death in the malaria parasites

    Serologically defined variations in malaria endemicity in Pará state, Brazil

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    BACKGROUND: Measurement of malaria endemicity is typically based on vector or parasite measures. A complementary approach is the detection of parasite specific IgG antibodies. We determined the antibody levels and seroconversion rates to both P. vivax and P. falciparum merozoite antigens in individuals living in areas of varying P. vivax endemicity in Pará state, Brazilian Amazon region. METHODOLOGY/PRINCIPAL FINDINGS: The prevalence of antibodies to recombinant antigens from P. vivax and P. falciparum was determined in 1,330 individuals. Cross sectional surveys were conducted in the north of Brazil in Anajás, Belém, Goianésia do Pará, Jacareacanga, Itaituba, Trairão, all in the Pará state, and Sucuriju, a free-malaria site in the neighboring state Amapá. Seroprevalence to any P. vivax antigens (MSP1 or AMA-1) was 52.5%, whereas 24.7% of the individuals were seropositive to any P. falciparum antigens (MSP1 or AMA-1). For P. vivax antigens, the seroconversion rates (SCR) ranged from 0.005 (Sucuriju) to 0.201 (Goianésia do Pará), and are strongly correlated to the corresponding Annual Parasite Index (API). We detected two sites with distinct characteristics: Goianésia do Pará where seroprevalence curve does not change with age, and Sucuriju where seroprevalence curve is better described by a model with two SCRs compatible with a decrease in force of infection occurred 14 years ago (from 0.069 to 0.005). For P. falciparum antigens, current SCR estimates varied from 0.002 (Belém) to 0.018 (Goianésia do Pará). We also detected a putative decrease in disease transmission occurred ∼29 years ago in Anajás, Goianésia do Pará, Itaituba, Jacareacanga, and Trairão. CONCLUSIONS: We observed heterogeneity of serological indices across study sites with different endemicity levels and temporal changes in the force of infection in some of the sites. Our study provides further evidence that serology can be used to measure and monitor transmission of both major species of malaria parasite

    An Adapter Architecture for heterogeneous data processing in bioinformatics pipelines

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    Bioinformatics is a growing field focused on both the domains of computer science and biology. A range of bioinformatics data processing tools exists at present, which takes inputs and produces outputs in varying formats depending on the algorithms and processes being used. The undesirable situation where such processes would produce outputs that may not allow the pipelining of other processes, calls for a generic bioinformatics data format converter. Though such converters currently exist, most of them are limited to text conversions and provide limited functionality. In addition, such functions have the potential capability of supporting parallelism to increase the overall throughput. A solution that can provide the said conversion functions as well as utility functions, while processing with a high throughput via parallelism is proposed through this paper. A utility function of this system requires storing bioinformatics data locally. In addition to facilitating this, an average compression rate of 26% achieved in data storage. Evaluation of the system using a set of 7,000,000 gene data showed the maximum time consumption for retrieval as 400ms

    Centrins, cell cycle regulation proteins in human malaria parasite Plasmodium falciparum

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    Molecules and cellular mechanisms that regulate the process of cell division in malaria parasites remain poorly understood. In this study we isolate and characterize the four Plasmodium falciparum centrins (PfCENs) and, by growth complementation studies, provide evidence for their involvement in cell division. Centrins are cytoskeleton proteins with key roles in cell division, including centrosome duplication, and possess four Ca2+-binding EF hand domains. By means of phylogenetic analysis, we were able to decipher the evolutionary history of centrins in eukaryotes with particular emphasis on the situation in apicomplexans and other alveolates. Plasmodium possesses orthologs of four distinct centrin paralogs traceable to the ancestral alveolate, including two that are unique to alveolates. By real time PCR and/or immunofluorescence, we determined the expression of PfCEN mRNA or protein in sporozoites, asexual blood forms, gametocytes, and in the oocysts developing inside mosquito mid-gut. Immunoelectron microscopy studies showed that centrin is expressed in close proximity with the nucleus of sporozoites and asexual schizonts. Furthermore, confocal and widefield microscopy using the double staining with α-tubulin and centrin antibodies strongly suggested that centrin is associated with the parasite centrosome. Following the episomal expression of the four PfCENs in a centrin knock-out Leishmania donovani parasite line that exhibited a severe growth defect, one of the PfCENs was able to partially restore Leishmania growth rate and overcome the defect in cytokinesis in such mutant cell line. To our knowledge, this study is the first characterization of a Plasmodium molecule that is involved in the process of cell division. These results provide the opportunity to further explore the role of centrins in cell division in malaria parasites and suggest novel targets to construct genetically modified, live attenuated malaria vaccines

    Natural Human Antibody Responses to Plasmodium vivax Apical Membrane Antigen 1 under Low Transmission and Unstable Malaria Conditions in Sri Lanka

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    Plasmodium vivax apical membrane antigen 1, an important malaria vaccine candidate, was immunogenic during natural malaria infections in Sri Lanka, where low transmission and unstable malaria conditions prevail. Antibody prevalence increased with exposure in areas where malaria was or was not endemic. A marked isotype switch to cytophilic (immunoglobulin G1 [IgG1]/IgG3) antibodies was evident with increasing exposure exclusively in residents from areas of endemicity
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