Toward the Online Visualisation of Algorithm Performance for Parameter Selection

This is the author accepted manuscript. The final version is available from Springer Verlag via the DOI in this recordA visualisation method is presented that is intended to assist evolutionary algorithm users with the parametrisation of their algorithms. The visualisation method presents the convergence and diversity properties such that different parametrisations can be easily compared, and poor performing parameter sets can be easily identified and discarded. The efficacy of the visualisation is presented using a set of benchmark optimisation problems from the literature, as well as a benchmark water distribution network design problem. Results show that it is possible to observe the different performance caused by different parametrisations. Future work discusses the potential of this visualisation within an online tool that will enable a user to discard poor parametrisations as they execute to free up resources for better ones

Visualising the Operation of Evolutionary Algorithms Optimising Water Distribution Network Design Problems

Multi-objective evolutionary algorithms (MOEAs) are well known for their ability to optimise the water distribution network design problem. However, their complex nature often restricts their use to algorithm experts. A method is proposed for visualising algorithm performance that will enable an engineer to compare different optimisers and select the best optimisation approach. Results show that the convergence and preservation of diversity can be shown in a simple visualisation that does not rely on in-depth MOEA experience

Analysis of gas chromatography/mass spectrometry data for catalytic lignin depolymerization using positive matrix factorization

Various catalytic technologies are being developed to efficiently convert lignin into renewable chemicals. However, due to its complexity, catalytic lignin depolymerization often generates a wide and complex distribution of product compounds. Gas chromatography/mass spectrometry (GC-MS) is a common analytical technique to profile the compounds that comprise lignin depolymerization products. GC-MS is applied not only to determine the product composition, but also to develop an understanding of the catalytic reaction pathways and of the relationships among catalyst structure, reaction conditions, and the resulting compounds generated. Although a very useful tool, the analysis of lignin depolymerization products with GC-MS is limited by the quality and scope of the available mass spectral libraries and the ability to correlate changes in GC-MS chromatograms to changes in lignin structure, catalyst structure, and other reaction conditions. In this study, the GC-MS data of the depolymerization products generated from organosolv hybrid poplar lignin using a copper-doped porous metal oxide catalyst and a methanol/dimethyl carbonate co-solvent was analyzed by applying a factor analysis technique, positive matrix factorization (PMF). Several different solutions for the PMF model were explored. A 13-factor solution sufficiently explains the chemical changes occurring to lignin depolymerization products as a function of lignin, reaction time, catalyst, and solvent. Overall, seven factors were found to represent aromatic compounds, while one factor was defined by aliphatic compounds

Promoting cultural rigour through critical appraisal tools in First Nations peoples' research.

OBJECTIVE: To highlight the emerging ethos of cultural rigour in the use of critical appraisal tools in research involving First Nations peoples. METHODS: Critical reflection on recent systematic review experience. RESULTS: The concept of cultural rigour is notably undefined in peer-reviewed journal articles but is evident in the development of critical appraisal tools developed by First Nations peoples. CONCLUSIONS: Conventional critical appraisal tools for assessing study quality are built on a limited view of health that excludes the cultural knowledge of First Nations peoples. Cultural rigour is an emerging field of activity that epitomises First Nations peoples' diverse cultural knowledge through community participation in all aspects of research. Implications for public health: Critical appraisal tools developed by First Nations peoples are available to researchers and direct attention to the social, cultural, political and human rights basis of health research

Gradient flux measurements of sea–air DMS transfer during the Surface Ocean Aerosol Production (SOAP) experiment

Direct measurements of marine dimethylsulfide (DMS) fluxes are sparse, particularly in the Southern Ocean. The Surface Ocean Aerosol Production (SOAP) voyage in February–March 2012 examined the distribution and flux of DMS in a biologically active frontal system in the southwest Pacific Ocean. Three distinct phytoplankton blooms were studied with oceanic DMS concentrations as high as 25 nmol L−1. Measurements of DMS fluxes were made using two independent methods: the eddy covariance (EC) technique using atmospheric pressure chemical ionization–mass spectrometry (API-CIMS) and the gradient flux (GF) technique from an autonomous catamaran platform. Catamaran flux measurements are relatively unaffected by airflow distortion and are made close to the water surface, where gas gradients are largest. Flux measurements were complemented by near-surface hydrographic measurements to elucidate physical factors influencing DMS emission. Individual DMS fluxes derived by EC showed significant scatter and, at times, consistent departures from the Coupled Ocean–Atmosphere Response Experiment gas transfer algorithm (COAREG). A direct comparison between the two flux methods was carried out to separate instrumental effects from environmental effects and showed good agreement with a regression slope of 0.96 (r2 = 0.89). A period of abnormal downward atmospheric heat flux enhanced near-surface ocean stratification and reduced turbulent exchange, during which GF and EC transfer velocities showed good agreement but modelled COAREG values were significantly higher. The transfer velocity derived from near-surface ocean turbulence measurements on a spar buoy compared well with the COAREG model in general but showed less variation. This first direct comparison between EC and GF fluxes of DMS provides confidence in compilation of flux estimates from both techniques, as well as in the stable periods when the observations are not well predicted by the COAREG model

Opportunities for improving the efficiency of paediatric HIV treatment programmes

Objectives: To conduct two economic analyses addressing whether to: routinely monitor HIV-infected children on antiretroviral therapy (ART) clinically or with laboratory tests; continue or stop cotrimoxazole prophylaxis when children become stabilized on ART. Design and methods: The ARROW randomized trial investigated alternative strategies to deliver paediatric ART and cotrimoxazole prophylaxis in 1206 Ugandan/Zimbabwean children. Incremental cost-effectiveness and value of implementation analyses were undertaken. Scenario analyses investigated whether laboratory monitoring (CD4 tests for efficacy monitoring; haematology/biochemistry for toxicity) could be tailored and targeted to be delivered cost-effectively. Cotrimoxazole use was examined in malaria-endemic and non-endemic settings. Results: Using all trial data, clinical monitoring delivered similar health outcomes to routine laboratory monitoring, but at a reduced cost, so was cost-effective. Continuing cotrimoxazole improved health outcomes at reduced costs. Restricting routine CD4+ monitoring to after 52 weeks following ART initiation and removing toxicity testing was associated with an incremental cost-effectiveness ratio of $6084 per quality-adjusted life-year (QALY) across all age groups, but was much lower for older children (12+ years at initiation; incremental cost-effectiveness ratio =$769/QALY). Committing resources to improve cotrimoxazole implementation appears cost-effective. A healthcare system that could pay $600/QALY should be willing to spend up to$12.0 per patient-year to ensure continued provision of cotrimoxazole. Conclusion: Clinically driven monitoring of ART is cost-effective in most circumstances. Routine laboratory monitoring is generally not cost-effective at current prices, except possibly CD4 testing amongst adolescents initiating ART. Committing resources to ensure continued provision of cotrimoxazole in health facilities is more likely to represent an efficient use of resources

The course of mental health problems in children presenting with abdominal pain in general practice

Objective. To investigate the course of mental health problems in children presenting to general practice with abdominal pain and to evaluate the extent to which abdominal pain characteristics during follow-up predict the presence of mental health problems at 12 months' follow-up. Design. A prospective cohort study with one-year follow-up. Setting. 53 general practices in the Netherlands, between May 2004 and March 2006. Subjects. 281 children aged 4-17 years. Main outcome measures. The presence of a depressive problem, an anxiety problem, and multiple non-specific somatic symptoms at follow-up and odds ratios of duration, frequency, and severity of abdominal pain with these mental health problems at follow-up. Results. A depressive problem persisted in 24/74 children (32.9%; 95% CI 22.3-44.9%), an anxiety problem in 13/43 (30.2%; 95% CI 17.2-46.1%) and the presence of multiple non-specific somatic symptoms in 75/170 children (44.1%; 95% CI 36.7-51.6%). None of the abdominal pain characteristics predicted a depressive or an anxiety problem at 12 months' follow-up. More moments of moderate to severe abdominal pain predicted the presence of multiple nonspecific somatic symptoms at follow-up. Conclusions. In one-third of the children presenting to general practice for abdominal pain, anxiety and depressive problems persist during one year of follow-up. Characteristics of the abdominal pain during the follow-up period do not predict anxiety or depressive problems after one-year follow-up. We recommend following over time children seen in primary care with abdominal pain

Melting in the Fe–C system to 70 GPa

We determined high-pressure melting curves for Fe₃C, Fe₇C₃ and the Fe-Fe₃C eutectic using laser-heated diamond anvil cell techniques. The principal criterion for melting is the observation of plateaus in the temperature vs. laser power function, which is an expected behavior at isobaric invariant points (e.g. congruent, eutectic, or peritectic melting) as increased power provides the latent heat of melting. We verified this technique by reproducing the melting curves of well-studied congruently melting compounds at high pressure (Fe, Pt, FeS, Pb), and by comparison with melting determinations made using thermocouple-based large-volume press techniques. The incongruent melting curve of Fe₃C measured to 70 GPa has an apparent change in slope at ~ 8 GPa, which we attribute to stabilization of FeC₃ at the solidus and the creation of a P-T invariant point. We observe that Fe₇C₃ melts at higher temperatures than Fe₃C between 14 and 52 GPa and has a steep P-T slope, and on this basis predicts an expanding field of Fe₇C₃ + liquid with pressure. The Fe-Fe₃C eutectic melting curve measured to 70 GPa agrees closely with multi-anvil data and thermodynamic calculations. We also measured the eutectic composition as a function of pressure using an in situ X-radiographic imaging technique, and find a rapid drop in carbon in the eutectic composition above about 20 GPa, generally consistent with previous thermodynamic calculations, and predict that the eutectic lies close to pure iron by ~ 50 GPa. We use these observations to extrapolate phase relations to core-relevant pressures. Convergence of the Fe₃C and Fe-Fe₃C eutectic melting curves indicate that Fe₃C is replaced at the solidus by Fe₇C₃ at ~ 120 GPa, forming another P-T invariant point and a new eutectic between Fe and Fe₇C₃. Thus, Fe₃C is unlikely to be an important crystallizing phase at core conditions, whereas Fe₇C₃ could become an important crystallizing phase.11 page(s

Abundance and properties of microplastics found in commercial fish meal and cultured common carp (Cyprinus carpio)

Microplastics (MPs) are environmental contaminants that are of increasing global concern. This study investigated the presence of MPs in four varieties of marine-derived commercial fish meal, followed by identification of their polymer composition using Fourier transform infrared (FTIR) spectroscopy. Exposure experiments were conducted on cultured common carp (Cyprinus carpio) by feeding four varieties of commercially available fish meal to determine relationships between abundance and properties of MPs found both in meal and in those transferred to cultured common carp. Mean particle sizes were 452 ± 161 μm (± SD). Fragments were the predominant shape of MP found in fish meal (67%) and C. carpio gastrointestinal tract and gills (65%), and polypropylene and polystyrene were the most present plastic polymers found in fish meal (45% and 24%, respectively) and C. carpio (37% and 33%, respectively). Positive relationships were found between MP levels in fish meal and C. carpio. This study highlights that marine-derived fish meal may be a source of MPs which can be transferred to cultured fish, thus posing a concern for aquaculture