MageComet—web application for harmonizing existing large-scale experiment descriptions

Motivation: Meta-analysis of large gene expression datasets obtained from public repositories requires consistently annotated data. Curation of such experiments, however, is an expert activity which involves repetitive manipulation of text. Existing tools for automated curation are few, which bottleneck the analysis pipeline

Nature of bonding and electronic structure in MgB2, a boron intercalation superconductor

Chemical bonding and electronic structure of MgB2, a boron-based newly discovered superconductor, is studied using self-consistent band structure techniques. Analysis of the transformation of the band structure for the hypothetical series of graphite - primitive graphite - primitive graphite-like boron - intercalated boron, shows that the band structure of MgB2 is graphite-like, with pi-bands falling deeper than in ordinary graphite. These bands possess a typically delocalized and metallic, as opposed to covalent, character. The in-plane sigma-bands retain their 2D covalent character, but exhibit a metallic hole-type conductivity. The coexistence of 2D covalent in-plane and 3D metallic-type interlayer conducting bands is a peculiar feature of MgB2. We analyze the 2D and 3D features of the band structure of MgB2 and related compounds, and their contributions to conductivity.Comment: 4 pages in revtex, 3 figures in 4 separate EPS file

Superconductivity of metallic boron in MgB_2

Boron in MgB_2 forms layers of honeycomb lattices with magnesium as a space filler. Band structure calculations indicate that Mg is substantially ionized, and the bands at the Fermi level derive mainly from B orbitals. Strong bonding with an ionic component and considerable metallic density of states yield a sizeable electron-phonon coupling. Using the rigid atomic sphere approximation and an analogy to Al, we estimate the coupling constant lambda to be of order 1. Together with high phonon frequencies, which we estimate via zone-center frozen phonon calculations to be between 300 and 700 cm^-1, this produces a high critical temperature, consistent with recent experiments reporting Tc=39 K (J. Akimitsu et al., to be published). Thus MgB_2 can be viewed as an analog of the long sought, but still hypothetical, superconducting metallic hydrogen.Comment: several typos corrected, most importantly, units in the tables fixed and a missing zero in the expression for the resistivity restore

Impact of paternal deployment to the conflicts in Iraq and Afghanistan and paternal post-traumatic stress disorder on the children of military fathers

Background Little is known about the social and emotional well-being of children whose fathers have been deployed to the conflicts in Iraq/ Afghanistan or who have post-traumatic stress disorder (PTSD). Aims To examine the emotional and behavioural well-being of children whose fathers are or have been in the UK armed forces, in particular the effects of paternal deployment to the conflicts in Iraq or Afghanistan and paternal PTSD. Method Fathers who had taken part in a large tri-service cohort and had children aged 3–16 years were asked about the emotional and behavioural well-being of their child(ren) and assessed for symptoms of PTSD via online questionnaires and telephone interview. Results In total, 621 (67%) fathers participated, providing data on 1044 children. Paternal deployment to Iraq or Afghanistan was not associated with childhood emotional and behavioural difficulties. Paternal probable PTSD were associated with child hyperactivity. This finding was limited to boys and those under 11 years of age. Conclusions This study showed that adverse childhood emotional and behavioural well-being was not associated with paternal deployment but was associated with paternal probable PTSD

Search for TeV Gamma-Rays from Shell-Type Supernova Remnants

If cosmic rays with energies <100 TeV originate in the galaxy and are accelerated in shock waves in shell-type supernova remnants (SNRs), gamma-rays will be produced as the result of proton and electron interactions with the local interstellar medium, and by inverse Compton emission from electrons scattering soft photon fields. We report on observations of two supernova remnants with the Whipple Observatory's 10 m gamma-ray telescope. No significant detections have been made and upper limits on the >500 GeV flux are reported. Non-thermal X-ray emission detected from one of these remnants (Cassiopeia A) has been interpreted as synchrotron emission from electrons in the ambient magnetic fields. Gamma-ray emission detected from the Monoceros/Rosette Nebula region has been interpreted as evidence of cosmic-ray acceleration. We interpret our results in the context of these observations.Comment: 4 pages, 2 figures, to appear in the proceedings of 26th International Cosmic Ray Conference (Salt Lake City, 1999

The Flux Variability of Markarian 501 in Very High Energy Gamma Rays

The BL Lacertae object Markarian 501 was identified as a source of gamma-ray emission at the Whipple Observatory in March 1995. Here we present a flux variability analysis on several times-scales of the 233 hour data set accumulated over 213 nights (from March 1995 to July 1998) with the Whipple Observatory 10 m atmospheric Cherenkov imaging telescope. In 1995, with the exception of a single night, the flux from Markarian 501 was constant on daily and monthly time-scales and had an average flux of only 10% that of the Crab Nebula, making it the weakest VHE source detected to date. In 1996, the average flux was approximately twice the 1995 flux and showed significant month-to-month variability. No significant day-scale variations were detected. The average gamma-ray flux above ~350 GeV in the 1997 observing season rose to 1.4 times that of the Crab Nebula -- 14 times the 1995 discovery level -- allowing a search for variability on time-scales shorter than one day. Significant hour-scale variability was present in the 1997 data, with the shortest, observed on MJD 50607, having a doubling time of ~2 hours. In 1998 the average emission level decreased considerably from that of 1997 (to ~20% of the Crab Nebula flux) but two significant flaring events were observed. Thus, the emission from Markarian 501 shows large amplitude and rapid flux variability at very high energies as does Markarian 421. It also shows large mean flux level variations on year-to-year time-scales, behaviour which has not been seen from Markarian 421 so far.Comment: 19 pages, 3 figures, to appear in ApJ, June 20, 1999, Vol. 518 #