Biological CO oxidation in the Sargasso Sea and in Vineyard Sound, Massachusetts

Author Posting. © The Author(s), 2005. This is the author's version of the work. It is posted here by permission of American Society of Limnology and Oceanography for personal use, not for redistribution. The definitive version was published in Limnology and Oceanography 50 (2005): 1205-1212.In situ dissolved carbon monoxide (CO) in oligotrophic waters follows a diel cycle varying from 0.3 to 0.5 nmol L-1 before dawn to 2.5 to 3 nmol L-1 in early afternoon, when photo-production of CO exceeds biological CO oxidation and other sinks. Coastal waters may contain up to 15 nmol L-1 [CO] in the daytime. Assays to measure the rate of CO bio-oxidation typically involve the addition of labeled CO to sealed samples, resulting in CO concentrations that are above ambient levels during incubation (up to 9 nmol L-1 CO). We find that biological oxidation of CO obeys first-order kinetics when incubated with up to 4 nmol L-1 [CO] in coastal water samples and up to between 4 and 10.8 nmol L-1 in oligotrophic waters. At higher [CO], kinetic behavior transitions to zero-order or saturation kinetics. CO–oxidation rate coefficients obtained in dark incubations were not representative of the entire diurnal period, as others have assumed. Biological CO–oxidation rate coefficients kco measured in dark incubations of Sargasso Sea surface water in summer were 0.020 ± 0.002 h-1 (mean ± standard deviation) and an order of magnitude greater than those measured in situ during daylight hours (0.002 ± 0.001 h-1). Dark and in situ rate coefficients in early spring were 0.006 ± 0.004 h-1 and 0.003 ± 0.001 h-1, respectively. In dark incubations of Vineyard Sound water, kco was 0.127 ± 0.038 h-1. The apparent half-saturation constant Kapp for CO ranged from 2.04 to 5.44 nmol L-1 CO in both environments.This research was supported by National Science Foundation grants OCE-98-11208 and OCE-01-36876, and the Reinhard Coastal Research Center and Coastal Ocean Institute grant BI-10918

The diversity of sulfide oxidation and sulfate reduction genes expressed by the bacterial communities of the Cariaco Basin, Venezuela

© The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Open Microbiology Journal 10 (2016): 140-149, doi:10.2174/1874285801610010140.Qualitative expression of dissimilative sulfite reductase (dsrA), a key gene in sulfate reduction, and sulfide:quinone oxidoreductase (sqr), a key gene in sulfide oxidation was investigated. Neither of the two could be amplified from mRNA retrieved with Niskin bottles but were amplified from mRNA retrieved by the Deep SID. The sqr and sqr-like genes retrieved from the Cariaco Basin were related to the sqr genes from a Bradyrhizobium sp., Methylomicrobium alcaliphilum, Sulfurovum sp. NBC37-1, Sulfurimonas autotrophica, Thiorhodospira sibirica and Chlorobium tepidum. The dsrA gene sequences obtained from the redoxcline of the Cariaco Basin belonged to chemoorganotrophic and chemoautotrophic sulfate and sulfur reducers belonging to the class Deltaproteobacteria (phylum Proteobacteria) and the order Clostridiales (phylum Firmicutes).Support for this work came from NSF grant MCB03-47811 to AYC, MIS, and GTT and NSF grant OCE-1061774 to VPE and CT

Evaluation of an International Entrepreneur Exchange Program: Impacts, Lessons Learned, and Implications for Agricultural Development

This study evaluated a two-way, visitor exchange project for entrepreneurship development between three African countries and the United States. The study’s purpose was to determine outcomes, understand lessons learned, and derive implications for international agricultural development. Findings of the study confirm visiting African Entrepreneur Fellows (AEFs) developed entrepreneurial knowledge, gained business skills, and acquired positive attitudes toward U.S. business and culture. The majority of AEFs had applied acquired knowledge and skills to improve their businesses and promoted open economic ideals, business ethics, and human rights in their businesses. As a result, AEFs were able to expand their business into new ventures, improve customer services, establish communication networks, and serve their communities. Visitor exchange, entrepreneurship-building programs are effective strategies in contributing to development efforts in developing countries. Paying due attention to the selection and matching of U.S. mentors with the business interests and learning needs of international fellows is necessary to ensure their learning expectations are met. It is important to assign international participants with suitable mentors for longer periods of time to increase the likelihood of receiving more in-depth learning experiences and develop lasting professional relationships to further collaboration. Realization of the potential of entrepreneurship-focused, visitor exchange programs between nations as a strategy for international agricultural development is the major implication of this study

Comparison of Niskin vs. in situ approaches for analysis of gene expression in deep Mediterranean Sea water samples

Author Posting. © The Author(s), 2014. This is the author's version of the work. It is posted here by permission of Elsevier for personal use, not for redistribution. The definitive version was published in Deep Sea Research Part II: Topical Studies in Oceanography 129 (2016): 213-222, doi:10.1016/j.dsr2.2014.10.020.Obtaining an accurate picture of microbial processes occurring in situ is essential for our understanding of marine biogeochemical cycles of global importance. Water samples are typically collected at depth and returned to the sea surface for processing and downstream experiments. Metatranscriptome analysis is one powerful approach for investigating metabolic activities of microorganisms in their habitat and which can be informative for determining responses of microbiota to disturbances such as the Deepwater Horizon oil spill. For studies of microbial processes occurring in the deep sea, however, sample handling, pressure, and other changes during sample recovery can subject microorganisms to physiological changes that alter the expression profile of labile messenger RNA. Here we report a comparison of gene expression profiles for whole microbial communities in a bathypelagic water column sample collected in the Eastern Mediterranean Sea using Niskin bottle sample collection and a new water column sampler for studies of marine microbial ecology, the Microbial Sampler – In Situ Incubation Device (MS-SID). For some taxa, gene expression profiles from samples collected and preserved 33 in situ were significantly different from potentially more stressful Niskin sampling and 34 preservation on deck. Some categories of transcribed genes also appear to be affected by sample 35 handling more than others. This suggests that for future studies of marine microbial ecology, 36 particularly targeting deep sea samples, an in situ sample collection and preservation approach 37 should be considered.This research was funded by NSF OCE-1061774 to VE and CT, NSF DBI-0424599 to CT and NSF OCE-0849578 to VE and colleague J. Bernhard. Cruise participation was partially supported by Deutsche Forschungsgemeinschaft (DFG) grant STO414/10-1 to T. Stoeck

Characterization of an autotrophic sulfide-oxidizing marine Arcobacter sp. that produces filamentous sulfur

Author Posting. © American Society for Microbiology, 2002. This article is posted here by permission of American Society for Microbiology for personal use, not for redistribution. The definitive version was published in Applied and Environmental Microbiology 68 (2002): 316-325, doi:10.1128/AEM.68.1.316-325.2002.A coastal marine sulfide-oxidizing autotrophic bacterium produces hydrophilic filamentous sulfur as a novel metabolic end product. Phylogenetic analysis placed the organism in the genus Arcobacter in the epsilon subdivision of the Proteobacteria. This motile vibrioid organism can be considered difficult to grow, preferring to grow under microaerophilic conditions in flowing systems in which a sulfide-oxygen gradient has been established. Purified cell cultures were maintained by using this approach. Essentially all 4',6-diamidino-2-phenylindole dihydrochloride-stained cells in a flowing reactor system hybridized with Arcobacter-specific probes as well as with a probe specific for the sequence obtained from reactor-grown cells. The proposed provisional name for the coastal isolate is "Candidatus Arcobacter sulfidicus." For cells cultured in a flowing reactor system, the sulfide optimum was higher than and the CO2 fixation activity was as high as or higher than those reported for other sulfur oxidizers, such as Thiomicrospira spp. Cells associated with filamentous sulfur material demonstrated nitrogen fixation capability. No ribulose 1,5-bisphosphate carboxylase/oxygenase could be detected on the basis of radioisotopic activity or by Western blotting techniques, suggesting an alternative pathway of CO2 fixation. The process of microbial filamentous sulfur formation has been documented in a number of marine environments where both sulfide and oxygen are available. Filamentous sulfur formation by "Candidatus Arcobacter sulfidicus" or similar strains may be an ecologically important process, contributing significantly to primary production in such environments.This work was supported by National Science Foundation grant IBN-9630054

Children's Medicines in Tanzania: A National Survey of Administration Practices and Preferences.

The dearth of age-appropriate formulations of many medicines for children poses a major challenge to pediatric therapeutic practice, adherence, and health care delivery worldwide. We provide information on current administration practices of pediatric medicines and describe key stakeholder preferences for new formulation characteristics. We surveyed children aged 6-12 years, parents/caregivers over age 18 with children under age 12, and healthcare workers in 10 regions of Tanzania to determine current pediatric medicine prescription and administration practices as well as preferences for new formulations. Analyses were stratified by setting, pediatric age group, parent/caregiver education, and healthcare worker cadre. Complete data were available for 206 children, 202 parents/caregivers, and 202 healthcare workers. Swallowing oral solid dosage forms whole or crushing/dissolving them and mixing with water were the two most frequently reported methods of administration. Children frequently reported disliking medication taste, and many had vomited doses. Healthcare workers reported medicine availability most significantly influences prescribing practices. Most parents/caregivers and children prefer sweet-tasting medicine. Parents/caregivers and healthcare workers prefer oral liquid dosage forms for young children, and had similar thresholds for the maximum number of oral solid dosage forms children at different ages can take. There are many impediments to acceptable and accurate administration of medicines to children. Current practices are associated with poor tolerability and the potential for under- or over-dosing. Children, parents/caregivers, and healthcare workers in Tanzania have clear preferences for tastes and formulations, which should inform the development, manufacturing, and marketing of pediatric medications for resource-limited settings

Multiwavelength Observations of the Second Largest Known FR II Radio Galaxy, NVSS 2146+82

We present multi-frequency VLA, multicolor CCD imaging, optical spectroscopy, and ROSAT HRI observations of the giant FR II radio galaxy NVSS 2146+82. This galaxy, which was discovered by the NRAO VLA Sky Survey (NVSS), has an angular extent of nearly 20' from lobe to lobe. The radio structure is normal for an FR II source except for its large size and regions in the lobes with unusually flat radio spectra. Our spectroscopy indicates that the optical counterpart of the radio core is at a redshift of z=0.145, so the linear size of the radio structure is ~4 h_50^-1 Mpc. This object is therefore the second largest FR II known (3C 236 is ~6 h_50^-1 Mpc). Optical imaging of the field surrounding the host galaxy reveals an excess number of candidate galaxy cluster members above the number typically found in the field surrounding a giant radio galaxy. WIYN HYDRA spectra of a sample of the candidate cluster members reveal that six share the same redshift as NVSS 2146+82, indicating the presence of at least a ``rich group'' containing the FR II host galaxy. ROSAT HRI observations of NVSS 2146+82 place upper limits on the X-ray flux of 1.33 x 10^-13 ergs cm^-2 s^-1 for any hot IGM and 3.52 x 10^-14 ergs cm^-2 s^-1 for an X-ray AGN, thereby limiting any X-ray emission at the distance of the radio galaxy to that typical of a poor group or weak AGN. Several other giant radio galaxies have been found in regions with overdensities of nearby galaxies, and a separate study has shown that groups containing FR IIs are underluminous in X-rays compared to groups without radio sources. We speculate that the presence of the host galaxy in an optically rich group of galaxies that is underluminous in X-rays may be related to the giant radio galaxy phenomenon.Comment: 46 pages, 15 figures, AASTeX aaspp4 style, accepted for publication in A

Global well-posedness of the 3-D full water wave problem

We consider the problem of global in time existence and uniqueness of solutions of the 3-D infinite depth full water wave problem. We show that the nature of the nonlinearity of the water wave equation is essentially of cubic and higher orders. For any initial interface that is sufficiently small in its steepness and velocity, we show that there exists a unique smooth solution of the full water wave problem for all time, and the solution decays at the rate $1/t$.Comment: 60 page

Developing standards for reporting implementation studies of complex interventions (StaRI): a systematic review and e-Delphi

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited