563 research outputs found
Evidence of Low-Temperature Superparamagnetism in Mn_{4}$ Nanoparticle Ensembles
Please refer to the abstract within the main body of the paper
Abandon Statistical Significance
We discuss problems the null hypothesis significance testing (NHST) paradigm
poses for replication and more broadly in the biomedical and social sciences as
well as how these problems remain unresolved by proposals involving modified
p-value thresholds, confidence intervals, and Bayes factors. We then discuss
our own proposal, which is to abandon statistical significance. We recommend
dropping the NHST paradigm--and the p-value thresholds intrinsic to it--as the
default statistical paradigm for research, publication, and discovery in the
biomedical and social sciences. Specifically, we propose that the p-value be
demoted from its threshold screening role and instead, treated continuously, be
considered along with currently subordinate factors (e.g., related prior
evidence, plausibility of mechanism, study design and data quality, real world
costs and benefits, novelty of finding, and other factors that vary by research
domain) as just one among many pieces of evidence. We have no desire to "ban"
p-values or other purely statistical measures. Rather, we believe that such
measures should not be thresholded and that, thresholded or not, they should
not take priority over the currently subordinate factors. We also argue that it
seldom makes sense to calibrate evidence as a function of p-values or other
purely statistical measures. We offer recommendations for how our proposal can
be implemented in the scientific publication process as well as in statistical
decision making more broadly
Magnetodielectric coupling in Mn3O4
We have investigated the dielectric anomalies associated with spin ordering
transitions in the tetragonal spinel MnO, using thermodynamic,
magnetic, and dielectric measurements. We find that two of the three magnetic
ordering transitions in MnO lead to decreases in the temperature
dependent dielectric constant at zero applied field. Applying a magnetic field
to the polycrystalline sample leaves these two dielectric anomalies practically
unchanged, but leads to an increase in the dielectric constant at the
intermediate spin-ordering transition. We discuss possible origins for this
magnetodielectric behavior in terms of spin-phonon coupling. Band structure
calculations suggest that in its ferrimagnetic state, MnO corresponds
to a semiconductor with no orbital degeneracy due to strong Jahn-Teller
distortion.Comment: 6 pages, 7 figure
Inhibition of BACH1 (FANCJ) helicase by backbone discontinuity is overcome by increased motor ATPase or length of loading strand
The BRCA1 associated C-terminal helicase (BACH1) associated with breast cancer has been implicated in double strand break (DSB) repair. More recently, BACH1 (FANCJ) has been genetically linked to the chromosomal instability disorder Fanconi Anemia (FA). Understanding the roles of BACH1 in cellular DNA metabolism and how BACH1 dysfunction leads to tumorigenesis requires a comprehensive investigation of its catalytic mechanism and molecular functions in DNA repair. In this study, we have determined that BACH1 helicase contacts with both the translocating and the non-translocating strands of the duplex are critical for its ability to track along the sugar phosphate backbone and unwind dsDNA. An increased motor ATPase of a BACH1 helicase domain variant (M299I) enabled the helicase to unwind the backbone-modified DNA substrate in a more proficient manner. Alternatively, increasing the length of the 5′ tail of the DNA substrate allowed BACH1 to overcome the backbone discontinuity, suggesting that BACH1 loading mechanism is critical for its ability to unwind damaged DNA molecules
Oxygen consumption and sulfate reduction in vegetated coastal habitats: Effects of physical disturbance
© 2019 Brodersen, Trevathan-Tackett, Nielsen, Connolly, Lovelock, Atwood and Macreadie. Vegetated coastal habitats (VCHs), such as mangrove forests, salt marshes and seagrass meadows, have the ability to capture and store carbon in the sediment for millennia, and thus have high potential for mitigating global carbon emissions. Carbon sequestration and storage is inherently linked to the geochemical conditions created by a variety of microbial metabolisms, where physical disturbance of sediments may expose previously anoxic sediment layers to oxygen (O 2 ), which could turn them into carbon sources instead of carbon sinks. Here, we used O 2 , hydrogen sulfide (H 2 S) and pH microsensors to determine how biogeochemical conditions, and thus aerobic and anaerobic metabolic pathways, vary across mangrove, salt marsh and seagrass sediments (case study from the Sydney area, Australia). We measured the biogeochemical conditions in the top 2.5 cm of surface (0-10 cm depth) and experimentally exposed deep sediments (> 50 cm depth) to simulate undisturbed and physically exposed sediments, respectively, and how these conditions may affect carbon cycling processes. Mangrove surface sediment exhibited the highest rates of O 2 consumption and sulfate (SO 42- ) reduction based on detailed microsensor measurements, with a diffusive O 2 uptake rate of 102 mmol O 2 m -2 d -1 and estimated sulfate reduction rate of 57 mmol S tot2- m -2 d -1 . Surface sediments (0-10 cm) across all the VCHs generally had higher O 2 consumption and estimated sulfate reduction rates than deeper layers (> 50 cm depth). O 2 penetration was < 4 mm for most sediments and only down to 1 mm depth in mangrove surface sediments, which correlated with a significantly higher percent organic carbon content (%C org ) within sediments originating from mangrove forests as compared to those from seagrass and salt marsh ecosystems. Additionally, pH dropped from 8.2 at the sediment/water interface to < 7-7.5 within the first 20 mm of sediment within all ecosystems. Prevailing anoxic conditions, especially in mangrove and seagrass sediments, as well as sediment acidification with depth, likely decreased microbial remineralisation rates of sedimentary carbon. However, physical disturbance of sediments and thereby exposure of deeper sediments to O 2 seemed to stimulate aerobic metabolism in the exposed surface layers, likely reducing carbon stocks in VCHs
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A long-term perspective on a modern drought in the American Southeast
The depth of the 2006-9 drought in the humid, southeastern US left several metropolitan areas with only a 60-120 day water supply. To put the region's recent drought variability in a long-term perspective, a dense and diverse tree-ring network—including the first records throughout the Apalachicola-Chattahoochee-Flint river basin—is used to reconstruct drought from 1665 to 2010 CE. The network accounts for up to 58.1% of the annual variance in warm-season drought during the 20th century and captures wet eras during the middle to late 20th century. The reconstruction shows that the recent droughts are not unprecedented over the last 346 years. Indeed, droughts of extended duration occurred more frequently between 1696 and 1820. Our results indicate that the era in which local and state water supply decisions were developed and the period of instrumental data upon which it is based are amongst the wettest since at least 1665. Given continued growth and subsequent industrial, agricultural and metropolitan demand throughout the southeast, insights from paleohydroclimate records suggest that the threat of water-related conflict in the region has potential to grow more intense in the decades to come
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