Land surface scheme conceptualisation and parameter values for three sites with contrasting soils and climate

International audienceThe objective of the present study is to test the performance of the ECMWF land surface module (LSM) developed by Viterbo and Beljaars (1995) and to identify primary future adjustments, focusing on the hydrological components. This was achieved by comparing off-line simulations against observations and a detailed state-of-the-art model over a range of experimental conditions. Results showed that the standard LSM, which uses fixed vegetation and soil parameter values, systematically underestimated evapotranspiration, partly due to underestimating bare soil evaporation, which appeared to be a conceptual problem. In dry summer conditions, transpiration was seriously underestimated. The bias in surface runoff and percolation was not of the same sign for all three locations. A sensitivity analysis, set up to explore the impact of using standard parameter values, found that implementing specific soil hydraulic properties had a significant effect on runoff and percolation at all three sites. Evapotranspiration, however affected only slightly at the temperate humid climate sites. Under semi-arid conditions, introducing site specific soil hydraulic properties plus a realistic rooting depth improved simulation results considerably. Future adjustments to the standard LSM should focus on parameter values of soil hydraulic functions and rooting depths and, conceptually, on the bare soil evaporation parameterisation and the soil bottom boundary condition. Implications of changing soil hydraulic properties for future large-simulations were explored briefly. For Europe, soil data requirements can be fulfilled partly by the recent data base HYPRES. Sandy and loamy sand soils will then cover about 65% of Europe, whereas in the present model 100% of the area is loam. Keywords: land surface model; soil hydraulic properties; water balance simulation</p

Infection control in dental health care during and after the SARS-CoV-2 outbreak

COVID-19 is an emerging infectious disease caused by the widespread transmission of the coronavirus SARS-CoV-2. Some of those infected become seriously ill. Others do not show any symptoms, but can still contribute to transmission of the virus. SARS-CoV-2 is excreted in the oral cavity and can be spread via aerosols. Aerosol generating procedures in dental health care can increase the risk of transmission of the virus. Due to the risk of infection of both dental healthcare workers and patients, additional infection control measures for all patients are strongly recommended when providing dental health care. Consideration should be given to which infection control measures are necessary when providing care in both the current situation and in the future

The core genome of the anaerobic oral pathogenic bacterium Porphyromonas gingivalis

<p>Abstract</p> <p>Background</p> <p>The Gram negative anaerobic bacterium <it>Porphyromonas gingivalis </it>has long been recognized as a causative agent of periodontitis. Periodontitis is a chronic infectious disease of the tooth supporting tissues eventually leading to tooth-loss. Capsular polysaccharide (CPS) of <it>P. gingivalis </it>has been shown to be an important virulence determinant. Seven capsular serotypes have been described. Here, we used micro-array based comparative genomic hybridization analysis (CGH) to analyze a representative of each of the capsular serotypes and a non-encapsulated strain against the highly virulent and sequenced W83 strain. We defined absent calls using <it>Arabidopsis thaliana </it>negative control probes, with the aim to distinguish between aberrations due to mutations and gene gain/loss.</p> <p>Results</p> <p>Our analyses allowed us to call aberrant genes, absent genes and divergent regions in each of the test strains. A conserved core <it>P. gingivalis </it>genome was described, which consists of 80% of the analyzed genes from the sequenced W83 strain. The percentage of aberrant genes between the test strains and control strain W83 was 8.2% to 13.7%. Among the aberrant genes many CPS biosynthesis genes were found. Most other virulence related genes could be found in the conserved core genome. Comparing highly virulent strains with less virulent strains indicates that <it>hmuS, </it>a putative CobN/Mg chelatase involved in heme uptake, may be a more relevant virulence determinant than previously expected. Furthermore, the description of the 39 W83-specific genes could give more insight in why this strain is more virulent than others.</p> <p>Conclusion</p> <p>Analyses of the genetic content of the <it>P. gingivalis </it>capsular serotypes allowed the description of a <it>P. gingivalis </it>core genome. The high resolution data from three types of analysis of triplicate hybridization experiments may explain the higher divergence between <it>P. gingivalis </it>strains than previously recognized.</p

The Influence of Oral Bacteria on Epithelial Cell Migration In Vitro

Oral ulcerations often arise as a side effect from chemo- and radiation therapy. In a previous clinical study, Porphyromonas gingivalis was identified as a positive predictor for oral ulcerations after hematopoetic stem cell transplantation, possibly incriminating P. gingivalis in delayed healing of the ulcerations. Therefore, it was tested whether P. gingivalis and its secreted products could inhibit the migration of oral epithelial cells in an in vitro scratch assay. To compare, the oral bacteria Prevotella nigrescens, Prevotella intermedia, Tannerella forsythia, and Streptococcus mitis were included. A standardized scratch was made in a confluent layer of human oral epithelial cells. The epithelial cells were challenged with bacterial cells and with medium containing secretions of these bacteria. Closure of the scratch was measured after 17 h using a phase contrast microscope. P. gingivalis, P. nigrescens, and secretions of P. gingivalis strongly inhibited cell migration. A challenge with 1000 heat-killed bacteria versus 1 epithelial cell resulted in a relative closure of the scratch of 25% for P. gingivalis and 20% for P. nigrescens. Weaker inhibitory effects were found for the other bacteria. The results confirmed our hypothesis that the oral bacteria may be involved in delayed wound healing