47 research outputs found

    Compilation of China-Japan International Input-Output Table by Economate I-O

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    Screening of deafness-causing DNA variants that are common in patients of European ancestry using a microarray-based approach

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    The unparalleled heterogeneity in genetic causes of hearing loss along with remarkable differences in prevalence of causative variants among ethnic groups makes single gene tests technically inefficient. Although hundreds of genes have been reported to be associated with nonsyndromic hearing loss (NSHL), GJB2, GJB6, SLC26A4, and mitochondrial (mt) MT-RNR1 and MTTS are the major contributors. In order to provide a faster, more comprehensive and cost effective assay, we constructed a DNA fluidic array, CapitalBioMiamiOtoArray, for the detection of sequence variants in five genes that are common in most populations of European descent. They consist of c.35delG, p.W44C, p.L90P, c.167delT (GJB2); 309kb deletion (GJB6); p.L236P, p.T416P (SLC26A4); and m.1555A>G, m.7444G>A (mtDNA). We have validated our hearing loss array by analyzing a total of 160 DNAs samples. Our results show 100% concordance between the fluidic array biochip-based approach and the established Sanger sequencing method, thus proving its robustness and reliability at a relatively low cost

    Robust estimation of bacterial cell count from optical density

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    Optical density (OD) is widely used to estimate the density of cells in liquid culture, but cannot be compared between instruments without a standardized calibration protocol and is challenging to relate to actual cell count. We address this with an interlaboratory study comparing three simple, low-cost, and highly accessible OD calibration protocols across 244 laboratories, applied to eight strains of constitutive GFP-expressing E. coli. Based on our results, we recommend calibrating OD to estimated cell count using serial dilution of silica microspheres, which produces highly precise calibration (95.5% of residuals <1.2-fold), is easily assessed for quality control, also assesses instrument effective linear range, and can be combined with fluorescence calibration to obtain units of Molecules of Equivalent Fluorescein (MEFL) per cell, allowing direct comparison and data fusion with flow cytometry measurements: in our study, fluorescence per cell measurements showed only a 1.07-fold mean difference between plate reader and flow cytometry data

    Methods and prospects for lithospheric structure imaging

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    In recent years, with rich observation data, the perfection of physical chemistry theory and the remarkable improvement of computer technology, great changes have taken place in the understanding of lithospheric physical and chemical properties. This paper introduces the current imaging methods of lithospheric structure and their advantages and disadvantages. Based on thermodynamic simulation and probability density inversion, we study the lithospheric thermal and compositional structure in South China (Sichuan Basin, Jiangnan Orogenic Belt, Lower Yangtze Craton and Cathaysian Block)using the observed Rayleigh wave phase velocity dispersion curve, geoid height, topography and surface heat flow. The results show that the lithosphere in the east of South China block is thin, and the lithospheric mantle is dominated by fertile peridotite, while the subduction of the Pacific plate from east to west may be the main dynamic mechanism of lithospheric thinning in the east of South China.Finally, we introduce the existing problems of lithospheric structure imaging and the prospect of future lithospheric structure imaging based on the current research status of lithospheric structure

    Discrete element simulation study on micromechanical characteristics of undisturbed and remolded loess in biaxial test

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    Loess is a special granular material, and its mechanical properties are determined by the microscopic structure of granules. The undisturbed and remolded loess have different mechanical properties due to the difference in structure. In order to solve the basic problem of how the structural properties of loess affect its mechanical characteristics, based on scanning electron microscopy (SEM) to study the macroscopic and microscopic mechanical properties of undisturbed loess and saturated remolded loess under constant strain rate biaxial test, while considering the shape of particles and the possibility of particle breakage. The simulation results show that when the stress is low, the undisturbed loess and the remolded loess force chains are mostly distributed near the large framework particles. With the increase of stress, the undisturbed force chains form a network pattern but still have the main conduction region, while the remolded loess has no obvious major conduction region and presents a uniform mesh. Under the same confining pressure and strain, the number of cracks in the undisturbed loess is lower and they are concentrated in the shear zone. The number of cracks in the remolded loess is more but more uniform.Tension cracks are mostly formed around the clusters of undisturbed loess and remolded loess. Shear cracks are mostly formed inside the clusters of framework particles, and the most obvious is when the clusters of particles are in contact with each other. Using this modeling method can effectively reflect the different internal stress states of undisturbed and remolded loess under the same stress condition due to the difference in internal structure composition. Based on the above research conclusions, a microscopic explanation of the influence of loess structure on the macroscopic strength is given. The research results can provide a certain basis for the prevention and control of geological disasters in the loess area
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