Pomegranate MR image analysis using fuzzy clustering algorithms

In this paper, the process of the pomegranate magnetic resonance (MR) images was studied.  Its internal structure is composed of tissue and seeds, which indicate the dependency between the maturity and internal quality.  The latter properties are important in pomegranate’s sorting and cannot be measured manually.  In this paper, an automatic algorithm was proposed to segment the internal structure of pomegranates.  Since the intensities of the calyx and stem of the pomegranate MR image are closely related to that of the soft tissue, their corresponding pixels are therefore labeled in the same class of the internal soft tissues.  In order to solve this problem, the exact shape of the pomegranate is first extracted from the background of the image using active contour models (ACMs).  Then, the stem and calyx are removed using morphological filters.  We have also proposed an improved version of the fuzzy c-means algorithm (FCM), the spatial FCM (SFCM), for segmentation of MR images of pomegranate.  SFCM is realized by incorporating the spatial neighborhood information into the standard FCM and modifying the membership weighting of each cluster.  SFCM employs spatial information of adjacent pixels leading to an improvement of the results.  It thus outperforms other techniques like FCM, even in the presence of Gaussian, salt and pepper, and speckle noises. Keywords: MRI, pomegranate, image segmentation, spatial fuzzy c-means, morphological filter&nbsp

Automatic Facial Skin Segmentation Using Possibilistic C-Means Algorithm for Evaluation of Facial Surgeries

Human face has a fundamental role in the appearance of individuals. So the importance of facial surgeries is undeniable. Thus, there is a need for the appropriate and accurate facial skin segmentation in order to extract different features. Since Fuzzy C-Means (FCM) clustering algorithm doesn't work appropriately for noisy images and outliers, in this paper we exploit Possibilistic C-Means (PCM) algorithm in order to segment the facial skin. For this purpose, first, we convert facial images from RGB to YCbCr color space. To evaluate performance of the proposed algorithm, the database of Sahand University of Technology, Tabriz, Iran was used. In order to have a better understanding from the proposed algorithm; FCM and Expectation-Maximization (EM) algorithms are also used for facial skin segmentation. The proposed method shows better results than the other segmentation methods. Results include misclassification error (0.032) and the region's area error (0.045) for the proposed algorithm

Automatic Facial Skin Segmentation Using Possibilistic C-Means Algorithm for Evaluation of Facial Surgeries

Human face has a fundamental role in the appearance of individuals. So the importance of facial surgeries is undeniable. Thus, there is a need for the appropriate and accurate facial skin segmentation in order to extract different features. Since Fuzzy C-Means (FCM) clustering algorithm doesn't work appropriately for noisy images and outliers, in this paper we exploit Possibilistic C-Means (PCM) algorithm in order to segment the facial skin. For this purpose, first, we convert facial images from RGB to YCbCr color space. To evaluate performance of the proposed algorithm, the database of Sahand University of Technology, Tabriz, Iran was used. In order to have a better understanding from the proposed algorithm; FCM and Expectation-Maximization (EM) algorithms are also used for facial skin segmentation. The proposed method shows better results than the other segmentation methods. Results include misclassification error (0.032) and the region's area error (0.045) for the proposed algorithm

Automatic Facial Skin Segmentation Using Possibilistic C-Means Algorithm for Evaluation of Facial Surgeries

Human face has a fundamental role in the appearance of individuals. So the importance of facial surgeries is undeniable. Thus, there is a need for the appropriate and accurate facial skin segmentation in order to extract different features. Since Fuzzy C-Means (FCM) clustering algorithm doesn't work appropriately for noisy images and outliers, in this paper we exploit Possibilistic C-Means (PCM) algorithm in order to segment the facial skin. For this purpose, first, we convert facial images from RGB to YCbCr color space. To evaluate performance of the proposed algorithm, the database of Sahand University of Technology, Tabriz, Iran was used. In order to have a better understanding from the proposed algorithm; FCM and Expectation-Maximization (EM) algorithms are also used for facial skin segmentation. The proposed method shows better results than the other segmentation methods. Results include misclassification error (0.032) and the region's area error (0.045) for the proposed algorithm

Classification of seed members of five riboswitch families as short sequences based on the features extracted by Block Location-Based Feature Extraction (BLBFE) method

Introduction: Riboswitches are short regulatory elements generally found in the untranslated regions of prokaryotes’ mRNAs and classified into several families. Due to the binding possibility between riboswitches and antibiotics, their usage as engineered regulatory elements and also their evolutionary contribution, the need for bioinformatics tools of riboswitch detection is increasing. We have previously introduced an alignment independent algorithm for the identification of frequent sequential blocks in the families of riboswitches. Herein, we report the application of block location-based feature extraction strategy (BLBFE), which uses the locations of detected blocks on riboswitch sequences as features for classification of seed sequences. Besides, mono- and dinucleotide frequencies, k-mer, DAC, DCC, DACC, PC-PseDNC-General and SC-PseDNC-General methods as some feature extraction strategies were investigated. Methods: The classifiers of the Decision tree, KNN, LDA, and Naïve Bayes, as well as k-fold cross-validation, were employed for all methods of feature extraction to compare their performances based on the criteria of accuracy, sensitivity, specificity, and f-score performance measures. Results: The outcome of the study showed that the BLBFE strategy classified the riboswitches indicating 87.65% average correct classification rate (CCR). Moreover, the performance of the proposed feature extraction method was confirmed with average values of 94.31%, 85.01%, 95.45% and 85.38% for accuracy, sensitivity, specificity, and f-score, respectively. Conclusion: Our result approved the performance of the BLBFE strategy in the classification and discrimination of the riboswitch groups showing remarkable higher values of CCR, accuracy, sensitivity, specificity and f-score relative to previously studied feature extraction methods

Integrated region-based segmentation using color components and texture features with prior shape knowledge

Segmentation is the art of partitioning an image into different regions where each one has some degree of uniformity in its feature space. A number of methods have been proposed and blind segmentation is one of them. It uses intrinsic image features, such as pixel intensity, color components and texture. However, some virtues, like poor contrast, noise and occlusion, can weaken the procedure. To overcome them, prior knowledge of the object of interest has to be incorporated in a top-down procedure for segmentation. Consequently, in this work, a novel integrated algorithm is proposed combining bottom-up (blind) and top-down (including shape prior) techniques. First, a color space transformation is performed. Then, an energy function (based on nonlinear diffusion of color components and directional derivatives) is defined. Next, signeddistance functions are generated from different shapes of the object of interest. Finally, a variational framework (based on the level set) is employed to minimize the energy function. The experimental results demonstrate a good performance of the proposed method compared with others and show its robustness in the presence of noise and occlusion. The proposed algorithm is applicable in outdoor and medical image segmentation and also in optical character recognition (OCR)

A Novel Flexible Inertia Weight Particle Swarm Optimization Algorithm.

Particle swarm optimization (PSO) is an evolutionary computing method based on intelligent collective behavior of some animals. It is easy to implement and there are few parameters to adjust. The performance of PSO algorithm depends greatly on the appropriate parameter selection strategies for fine tuning its parameters. Inertia weight (IW) is one of PSO's parameters used to bring about a balance between the exploration and exploitation characteristics of PSO. This paper proposes a new nonlinear strategy for selecting inertia weight which is named Flexible Exponential Inertia Weight (FEIW) strategy because according to each problem we can construct an increasing or decreasing inertia weight strategy with suitable parameters selection. The efficacy and efficiency of PSO algorithm with FEIW strategy (FEPSO) is validated on a suite of benchmark problems with different dimensions. Also FEIW is compared with best time-varying, adaptive, constant and random inertia weights. Experimental results and statistical analysis prove that FEIW improves the search performance in terms of solution quality as well as convergence rate

Pupil Detection for Automatic Diagnosis of Eye Diseases Using Optimized Color Mapping

Introduction: Pupil and iris disorders form an important category of eye diseases. Accurate segmentation of the pupil is the first and most important step in the automatic diagnosis of diseases related to the pupil and iris. Most of the existing methods do not have enough accuracy and are sensitive to the effects of noise and specular spot reflection. In addition, the images used in these methods usually have limitations, such as the viewing angle. Method: In the proposed algorithm, a stable method is offered to remove the effects of specular spot reflection in the pupil, and necessary preprocessing is done to detect the exact location of the pupil. An optimized color mapping algorithm is proposed and the mapping is calculated with the help of the LM algorithm to accurately determine the pupil boundary. This method does not impose any restrictions on the eye image and shape, and the angle of the pupil in the image can be in any shape and direction. Results: The proposed method does not assume any specific model as the final pupil boundary (circle or oval) and is robust to noise and specular reflection factors as well. This method has been able to accurately detect the pupil boundary with the accuracy of 98.8% using UBIRIS dataset and 98% using the collected data by authors. Conclusion: The method presented in this paper can be used to increase the accuracy in determining the internal and external border of the iris to diagnose diseases related to the pupil and iris, as well as identity identification based on iris tissue