Two-Dimensional Pattern Matching with k Mismatches

We give an algorithm which finds all occurrences of an m1 x m2 pattern array embedded as subarrays in an n1 x n2 array of text, where at most k mismatches are allowed per occurrence. The algorithm runs in time O((k+a)(blogb+ n1n2)), where a = min(m1m2) and b=max(m1m2). This improves upon the previously best known algorithm, and is asymptotically optimal for k ≈ a

Mesh and Pyramid Algorithms for Iconic Indexing

In this paper parallel algorithms on meshes and pyramids for iconic indexing are presented. Our algorithms are asymptotically superior to previously known parallel algorithms

A Practical Hierarchial Model of Parallel Computation: The Model

We introduce a model of parallel computation that retains the ideal properties of the PRAM by using it as a sub-model, while simultaneously being more reflective of realistic parallel architectures by accounting for and providing abstract control over communication and synchronization costs. The Hierarchical PRAM (H-PRAM) model controls conceptual complexity in the face of asynchrony in two ways. First, by providing the simplifying assumption of synchronization to the design of algorithms, but allowing the algorithms to work asynchronously with each other; and organizing this control asynchrony via an implicit hierarchy relation. Second, by allowing the restriction of communication asynchrony in order to obtain determinate algorithms (thus greatly simplifying proofs of correctness). It is shown that the model is reflective of a variety of existing and proposed parallel architectures, particularly ones that can support massive parallelism. Relationships to programming languages are discussed. Since the PRAM is a sub-model, we can use PRAM algorithms as sub-algorithms in algorithms for the H-PRAM; thus results that have been established with respect to the PRAM are potentially transferable to this new model. The H-PRAM can be used as a flexible tool to investigate general degrees of locality (“neighborhoods of activity) in problems, considering communication and synchronization simultaneously. This gives the potential of obtaining algorithms that map more efficiently to architectures, and of increasing the number of processors that can efficiently be used on a problem (in comparison to a PRAM that charges for communication and synchronization). The model presents a framework in which to study the extent that general locality can be exploited in parallel computing. A companion paper demonstrates the usage of the H-PRAM via the design and analysis of various algorithms for computing the complete binary tree and the FFT/butterfly graph