Vertical-axis rotations determined from paleomagnetism of Mesozoic and Cenozoic strata within the Bolivian Andes

Thermal demagnetization and principal component analysis allowed determination of characteristic remanent magnetization (ChRM) directions from 256 sites at 22 localities in Mesozoic and Cenozoic sedimentary strata of the Bolivian Altiplano and Eastern Cordillera. An inclination-only fold test of site-mean ChRM directions from Cenozoic units (principally the Santa Lucía Formation) indicates optimum unfolding at 97.1% unfolding, consistent with a primary origin for the ChRM. For Mesozoic strata, optimum unfolding occurred at 89.2%, perhaps indicating secondary remagnetization at some locations. For Cenozoic units, comparison of locality-mean directions with expected paleomagnetic directions indicates vertical-axis rotations from 33° counterclockwise to 24° clockwise. Euler pole analysis of along-strike variation in crustal shortening within the Subandean and Interandean zones indicates 18° clockwise rotation south of the axis of curvature of the Bolivian Andes and 6° counterclockwise rotation northwest of the axis during the past 10 m.y. Along-strike variation of shortening within the Eastern Cordillera indicates 8° clockwise rotation south of the axis and 8° counterclockwise rotation northwest of the axis from 35 to 10 Ma. These vertical-axis rotations produced by along-strike variations in crustal shortening during development of the Bolivian fold-thrust belt agree well with observed rotations determined from paleomagnetism of Cenozoic rocks in the Eastern Cordillera and in the Subandean and Interandean zones. However, local rotations are required to account for complex rotations in the Cochabamba Basin and within the Altiplano. The curvature of the Bolivian Andes has been progressively enhanced during Cenozoic fold-thrust belt deformation

Tertiary remagnetization of Paleozoic rocks from the Eastern Cordillera and sub-Andean Belt of Bolivia

Paleomagnetic samples were collected from 98 sedimentary horizons in eight different Devonian to Permian sedimentary units at eight localities in the Eastern Cordillera and the sub-Andean Belt of Bolivia. For 77 sites, thermal demagnetization allowed determination of a characteristic magnetization (ChRM) with site-mean 95% confidence limit, α95, ≤15°. The ChRM is carried predominantly or entirely by hematite. Fold and reversal tests from two of the sampled localities indicate that the characteristic magnetization is synfolding, likely acquired during the earliest stages of deformation. Additionally, a modified conglomerate test at one locality and the nearly uniform direction of ChRM across the Devonian to Permian age units clearly reveals the secondary nature of the characteristic magnetization. Finally, the ChRM directions are discordant from any expected Paleozoic directions. Paleomagnetic poles calculated from the ChRM directions fall near the Cenozoic portion of the apparent polar wander path for South America. We interpret these observations to indicate widespread chemical remagnetization of these Paleozoic strata during, but prior to completion of, Cenozoic Andean folding

Exome resequencing and GWAS for growth, ecophysiology, and chemical and metabolomic composition of wood of Populus trichocarpa.

BackgroundPopulus trichocarpa is an important forest tree species for the generation of lignocellulosic ethanol. Understanding the genomic basis of biomass production and chemical composition of wood is fundamental in supporting genetic improvement programs. Considerable variation has been observed in this species for complex traits related to growth, phenology, ecophysiology and wood chemistry. Those traits are influenced by both polygenic control and environmental effects, and their genome architecture and regulation are only partially understood. Genome wide association studies (GWAS) represent an approach to advance that aim using thousands of single nucleotide polymorphisms (SNPs). Genotyping using exome capture methodologies represent an efficient approach to identify specific functional regions of genomes underlying phenotypic variation.ResultsWe identified 813 K SNPs, which were utilized for genotyping 461 P. trichocarpa clones, representing 101 provenances collected from Oregon and Washington, and established in California. A GWAS performed on 20 traits, considering single SNP-marker tests identified a variable number of significant SNPs (p-value < 6.1479E-8) in association with diameter, height, leaf carbon and nitrogen contents, and δ15N. The number of significant SNPs ranged from 2 to 220 per trait. Additionally, multiple-marker analyses by sliding-windows tests detected between 6 and 192 significant windows for the analyzed traits. The significant SNPs resided within genes that encode proteins belonging to different functional classes as such protein synthesis, energy/metabolism and DNA/RNA metabolism, among others.ConclusionsSNP-markers within genes associated with traits of importance for biomass production were detected. They contribute to characterize the genomic architecture of P. trichocarpa biomass required to support the development and application of marker breeding technologies

Multi-Disciplinary Project-Based Paradigm That Uses Hands-On Desktop Learning Modules and modern Learning Pedagogies

It has been established that traditional lectures ARE NOT best for student learning – yet that is what the community almost universally does! Furthermore, engineers work in broad multidisciplinary teams while classroom learning is individual and narrow. Yet, educators rarely invest the time and resources necessary to employ such innovations. In this CCLI type II award we are further refining Desktop Learning Modules (DLMs) within a Cooperative, Hands-on, Active, Problem based, Learning (CHAPL) setting for Chemical, Civil, Mechanical, Bio- and Electrical Engineering courses at a diverse set of institutions, including a community college engaged through a distance learning mode. A workbook is being developed and tested for easier adoption of the hands-on units and accompanying pedagogy. Existing concept inventories are not always showing significant gains in apparent student learning either for control or experimental groups and we are concluding these assessments are not well aligned with the macroscale design calculations being emphasized in the course. Therefore, new concept question assessments are being developed consisting of some macroscale questions from past inventories along with conceptual essay and calculation based questions aligned more specifically with the DLM processes at hand. Past implementations like this show students learn key concepts at least as well from each other in a guided inquiry as they do from lecture. Also, a mixed qualitative / quantitative assessment using a critical reasoning rubric reveals student abilities become better aligned with what is expected of graduating engineers ready for industry and that the CHAPL/DLM environment serves to reinforce understanding of physical phenomena, and to develop analytical and evaluative problem-solving skills. Interviews, surveys and team reports reveal students are better able to visualize concepts and that classroom exercises are promoting team skills and academic rigor. Faculty interviews reveal enhanced awareness of student misconceptions and improved monitoring of student growth in conceptual understanding and interpersonal skills. The poster and paper will highlight our findings and illustrate the CHAPL environment. Hands-on DLMs with cartridges used in teaching principles in the various disciplines will be demonstrated. A survey will be offered to those viewing the poster to assess potential interest in adoption of the DLMs and in participating in a follow-on NSF Type III proposal for Transforming Undergraduate Engineering Education through use of the DLMs and associated CHAPL pedagogies

A Snapshot Survey for Gravitational Lenses Among z>=4.0 Quasars: I. The z>5.7 Sample

Over the last few years, the Sloan Digital Sky Survey (SDSS) has discovered several hundred quasars with redshift between 4.0 and 6.4. Including the effects of magnification bias, one expects a priori that an appreciable fraction of these objects are gravitationally lensed. We have used the Advanced Camera for Surveys on the Hubble Space Telescope to carry out a snapshot imaging survey of high-redshift SDSS quasars to search for gravitationally split lenses. This paper, the first in a series reporting the results of the survey, describes snapshot observations of four quasars at z = 5.74, 5.82, 5.99 and 6.30, respectively. We find that none of these objects has a lensed companion within 5 magnitudes with a separation larger than 0.3 arcseconds; within 2.5 magnitudes, we can rule out companions within 0.1 arcseconds. Based on the non-detection of strong lensing in these four systems, we constrain the z~6 luminosity function to a slope of beta>-4.63 (3 sigma), assuming a break in the quasar luminosity function at M_{1450}^*=-24.0. We discuss the implications of this constraint on the ionizing background due to quasars in the early universe. Given that these quasars are not highly magnified, estimates of the masses of their central engines by the Eddington argument must be taken seriously, possibly challenging models of black hole formation.Comment: 23 pages, 8 figures, 2 tables, submitted to A

The Sloan Digital Sky Survey Quasar Lens Search. I. Candidate Selection Algorithm

We present an algorithm for selecting an uniform sample of gravitationally lensed quasar candidates from low-redshift (0.6<z<2.2) quasars brighter than i=19.1 that have been spectroscopically identified in the SDSS. Our algorithm uses morphological and color selections that are intended to identify small- and large-separation lenses, respectively. Our selection algorithm only relies on parameters that the SDSS standard image processing pipeline generates, allowing easy and fast selection of lens candidates. The algorithm has been tested against simulated SDSS images, which adopt distributions of field and quasar parameters taken from the real SDSS data as input. Furthermore, we take differential reddening into account. We find that our selection algorithm is almost complete down to separations of 1'' and flux ratios of 10^-0.5. The algorithm selects both double and quadruple lenses. At a separation of 2'', doubles and quads are selected with similar completeness, and above (below) 2'' the selection of quads is better (worse) than for doubles. Our morphological selection identifies a non-negligible fraction of single quasars: To remove these we fit images of candidates with a model of two point sources and reject those with unusually small image separations and/or large magnitude differences between the two point sources. We estimate the efficiency of our selection algorithm to be at least 8% at image separations smaller than 2'', comparable to that of radio surveys. The efficiency declines as the image separation increases, because of larger contamination from stars. We also present the magnification factor of lensed images as a function of the image separation, which is needed for accurate computation of magnification bias.Comment: 15 pages, 17 figures, 4 tables, accepted for publication in A

High-Redshift SDSS Quasars with Weak Emission Lines

We identify a sample of 74 high-redshift quasars (z>3) with weak emission lines from the Fifth Data Release of the Sloan Digital Sky Survey and present infrared, optical, and radio observations of a subsample of four objects at z>4. These weak emission-line quasars (WLQs) constitute a prominent tail of the Lya+NV equivalent width distribution, and we compare them to quasars with more typical emission-line properties and to low-redshift active galactic nuclei with weak/absent emission lines, namely BL Lac objects. We find that WLQs exhibit hot (T~1000 K) thermal dust emission and have rest-frame 0.1-5 micron spectral energy distributions that are quite similar to those of normal quasars. The variability, polarization, and radio properties of WLQs are also different from those of BL Lacs, making continuum boosting by a relativistic jet an unlikely physical interpretation. The most probable scenario for WLQs involves broad-line region properties that are physically distinct from those of normal quasars.Comment: Updated to match version published in ApJ. 20 pages, 12 figure

Efficient Photometric Selection of Quasars from the Sloan Digital Sky Survey: 100,000 z<3 Quasars from Data Release One

We present a catalog of 100,563 unresolved, UV-excess (UVX) quasar candidates to g=21 from 2099 deg^2 of the Sloan Digital Sky Survey (SDSS) Data Release One (DR1) imaging data. Existing spectra of 22,737 sources reveals that 22,191 (97.6%) are quasars; accounting for the magnitude dependence of this efficiency, we estimate that 95,502 (95.0%) of the objects in the catalog are quasars. Such a high efficiency is unprecedented in broad-band surveys of quasars. This ``proof-of-concept'' sample is designed to be maximally efficient, but still has 94.7% completeness to unresolved, g<~19.5, UVX quasars from the DR1 quasar catalog. This efficient and complete selection is the result of our application of a probability density type analysis to training sets that describe the 4-D color distribution of stars and spectroscopically confirmed quasars in the SDSS. Specifically, we use a non-parametric Bayesian classification, based on kernel density estimation, to parameterize the color distribution of astronomical sources -- allowing for fast and robust classification. We further supplement the catalog by providing photometric redshifts and matches to FIRST/VLA, ROSAT, and USNO-B sources. Future work needed to extend the this selection algorithm to larger redshifts, fainter magnitudes, and resolved sources is discussed. Finally, we examine some science applications of the catalog, particularly a tentative quasar number counts distribution covering the largest range in magnitude (14.2<g<21.0) ever made within the framework of a single quasar survey.Comment: 35 pages, 11 figures (3 color), 2 tables, accepted by ApJS; higher resolution paper and ASCII version of catalog available at http://sdss.ncsa.uiuc.edu/qso/nbckde

Mesonic Form Factors

We have started a program to compute the electromagnetic form factors of mesons. We discuss the techniques used to compute the pion form factor and present preliminary results computed with domain wall valence fermions on MILC asqtad lattices, as well as Wilson fermions on quenched lattices. These methods can easily be extended to rho-to-gamma-pi transition form factors.Comment: 7 pages, 6 figures, Workshop on Lattice Hadron Physics 2003 (LHP2003