MLS and CALIOP Cloud Ice Measurements in the Upper Troposphere: A Constraint from Microwave on Cloud Microphysics

This study examines the consistency and microphysics assumptions among satellite ice water content (IWC) retrievals in the upper troposphere with collocated A-Train radiances from Microwave Limb Sounder (MLS) and lidar backscatters from Cloud-Aerosol Lidar with Orthogonal Polarization (CALIOP). For the cases in which IWC values are small (less than 10mg m(exp-23)), the cloud ice retrievals are constrained by both MLS 240- and 640- GHz radiances and CALIOP 532-nm backscatter beta(532). From the observed relationships between MLS cloud-induced radiance T(sub cir) and the CALIOP backscatter integrated gamma532 along the MLS line of sight, an empirical linear relation between cloud ice and the lidar backscatter is found: IWC/beta532=0.58+/-0.11. This lidar cloud ice relation is required to satisfy the cloud ice emission signals simultaneously observed at microwave frequencies, in which ice permittivity is relatively well known. This empirical relationship also produces IWC values that agree well with the CALIOP, version 3.0, retrieval at values, less than 10mg m(exp-3). Because the microphysics assumption is critical in satellite cloud ice retrievals, the agreement found in the IWC-beta532 relationships increase fidelity of the assumptions used by the lidar and microwave techniques for upper-tropospheric clouds

On the origin of the asymmetric dwarf galaxy distribution around Andromeda

The dwarf galaxy distribution surrounding M31 is significantly anisotropic in nature. Of the 30 dwarf galaxies in this distribution, 15 form a disc-like structure and 23 are contained within the hemisphere facing the Milky Way. Using a realistic local potential, we analyse the conditions required to produce and maintain these asymmetries. We find that some dwarf galaxies are required to have highly eccentric orbits in order to preserve the presence of the hemispherical asymmetry with an appropriately large radial dispersion. Under the assumption that the dwarf galaxies originate from a single association or accretion event, we find that the initial size and specific energy of that association must both be relatively large in order to produce the observed hemispherical asymmetry. However if the association was large in physical size, the very high-energy required would enable several dwarf galaxies to escape from the M31 and be captured by the Milky Way. Furthermore, we find that associations that result in this structure have total specific energies concentrated around $E = V_{esc}^{2} - V_{init}^{2} \sim 200^2$ -- $300^2\ \rm{km^2\ s^{-2}}$, implying that the initial velocity and initial position needed to produce the structure are strongly correlated. The overlap of initial conditions required to produce the radial dispersion, angular dispersion, and the planar structure is small and suggests that either they did not originate from a single accretion event, or that these asymmetric structures are short-lived.Comment: 12 pages, 10 figures, accepted by MNRA

A Phase II Study of Irinotecan and Carboplatin in Advanced Non-small Cell Lung Cancer with Pharmacogenomic Analysis: Final Report

PurposeWe conducted a phase II study of carboplatin and irinotecan in patients with advanced non-small cell lung cancer (NSCLC). In addition, we studied the correlation between certain genotypes of enzymes involved in irinotecan metabolism with efficacy and toxicity.Patients and MethodsPatients with stage IIIB, IV, or recurrent NSCLC received a combination of irinotecan and carboplatin every 3 weeks at a dose of 200 mg/m2 and area under the curve of 5. Pharmacogenomic analysis was performed on several genes of interest (ABCB1, CYP3A4*1B, ERCC2, GSTP1, UGT1A1*28, and XRCC1).ResultsForty-two patients enrolled between December 2001 and January 2004. Six patients achieved partial responses (14%), and 19 (45%) had stable disease. The median progression-free survival was 6.9 months. The median overall survival was 11.7 months, with 1-year overall survival of 42%. The most common toxicities were hematologic; grade 3 or 4 neutropenia was experienced by 26 patients (62%) during treatment, and 15 patients (36%) experienced grade 3 or 4 thrombocytopenia. The homozygous UGT1A1*28 (7/7) genotype was associated with grade 4 neutropenia in three of four patients (75%), but only eight out of 30 (27%) with 6/6 or 6/7 genotypes experienced grade 4 neutropenia (p = 0.09). None of the 14 patients with the GSTP1 I105V A/A genotype had a partial response, as opposed to five out of 19 (26%) of those with the G/A or G/G genotypes (p = 0.057).ConclusionThe combination of carboplatin and irinotecan is an active combination in NSCLC, with response rates comparable with other platinum-containing doublets. Further studies with irinotecan should incorporate prospective pharmacogenomic analysis to identify markers for response and toxicity

Variations of tropical upper tropospheric clouds with sea surface temperature and implications for radiative effects

The variations of tropical upper tropospheric (UT) clouds with sea surface temperature (SST) are analyzed using effective cloud fraction from the Atmospheric Infrared Sounder (AIRS) on Aqua and ice water content (IWC) from the Microwave Limb Sounder (MLS) on Aura. The analyses are limited to UT clouds above 300 hPa. Our analyses do not suggest a negative correlation of tropical-mean UT cloud fraction with the cloud-weighted SST (CWT). Instead, both tropical-mean UT cloud fraction and IWC are found to increase with CWT, although their correlations with CWT are rather weak. The rate of increase of UT cloud fraction with CWT is comparable to that of precipitation, while the UT IWC and ice water path (IWP) increase more strongly with CWT. The radiative effect of UT clouds is investigated, and they are shown to provide a net warming at the top of the atmosphere. An increase of IWP with SST yields an increase of net warming that corresponds to a positive feedback, until the UT IWP exceeds a value about 50% greater than presently observed by MLS. Further increases of the UT IWP would favor the shortwave cooling effect, causing a negative feedback. Sensitivities of UT cloud forcing to the uncertainties in UT CFR and IWC measurements are discussed

Optical Spectra of SNR Candidates in NGC 300

We present moderate-resolution (<5A) long-slit optical spectra of 51 nebular objects in the nearby Sculptor Group galaxy NGC 300 obtained with the 2.3 meter Advanced Technology Telescope at Siding Spring Observatory, Australia. Adopting the criterion of [SII]/Ha>=0.4 to confirm supernova remnants (SNRs) from optical spectra, we find that of 28 objects previously proposed as SNRs from optical observations, 22 meet this criterion with six showing [SII]/Ha of less than 0.4. Of 27 objects suggested as SNRs from radio data, four are associated with the 28 previously proposed SNRs. Of these four, three (included in the 22 above) meet the criterion. In all, 22 of the 51 nebular objects meet the [SII]/Ha criterion as SNRs while the nature of the remaining 29 objects remains undetermined by these observations.Comment: Accepted for publication in Astrophysics & Space Scienc

The USNO-B Catalog

USNO-B is an all-sky catalog that presents positions, proper motions, magnitudes in various optical passbands, and star/galaxy estimators for 1,042,618,261 objects derived from 3,643,201,733 separate observations. The data were obtained from scans of 7,435 Schmidt plates taken for the various sky surveys during the last 50 years. USNO-B1.0 is believed to provide all-sky coverage, completeness down to V = 21, 0.2 arcsecond astrometric accuracy at J2000, 0.3 magnitude photometric accuracy in up to five colors, and 85% accuracy for distinguishing stars from non-stellar objects. A brief discussion of various issues is given here, but the actual data are available from http://www.nofs.navy.mil and other sites.Comment: Accepted by Astronomical Journa

Acquisition of pneumococci specific effector and regulatory Cd4+ T cells localising within human upper respiratory-tract mucosal lymphoid tissue

The upper respiratory tract mucosa is the location for commensal Streptococcus (S.) pneumoniae colonization and therefore represents a major site of contact between host and bacteria. The CD4(+) T cell response to pneumococcus is increasingly recognised as an important mediator of immunity that protects against invasive disease, with data suggesting a critical role for Th17 cells in mucosal clearance. By assessing CD4 T cell proliferative responses we demonstrate age-related sequestration of Th1 and Th17 CD4(+) T cells reactive to pneumococcal protein antigens within mucosal lymphoid tissue. CD25(hi) T cell depletion and utilisation of pneumococcal specific MHCII tetramers revealed the presence of antigen specific Tregs that utilised CTLA-4 and PDL-1 surface molecules to suppress these responses. The balance between mucosal effector and regulatory CD4(+) T cell immunity is likely to be critical to pneumococcal commensalism and the prevention of unwanted pathology associated with carriage. However, if dysregulated, such responses may render the host more susceptible to invasive pneumococcal infection and adversely affect the successful implementation of both polysaccharide-conjugate and novel protein-based pneumococcal vaccines

Angiosperm symbioses with non-mycorrhizal fungal partners enhance N acquisition from ancient organic matter in a warming maritime Antarctic

In contrast to the situation in plants inhabiting most of the world’s ecosystems, mycorrhizal fungi are usually absent from roots of the only two native vascular plant species of maritime Antarctica, Deschampsia antarctica and Colobanthus quitensis. Instead, a range of ascomycete fungi, termed dark septate endophytes (DSEs), frequently colonise the roots of these plant species. We demonstrate that colonisation of Antarctic vascular plants by DSEs facilitates not only the acquisition of organic nitrogen as early protein breakdown products, but also as non-proteinaceous D-amino acids and their short peptides, accumulated in slowly-decomposing organic matter, such as moss peat. Our findings suggest that, in a warming maritime Antarctic, this symbiosis has a key role in accelerating the replacement of formerly dominant moss communities by vascular plants, and in increasing the rate at which ancient carbon stores laid down as moss peat over centuries or millennia are returned to the atmosphere as CO2.Additional co-authors: Richard D Bardgett, David W Hopkins and Davey L Jone

Re-evaluating pretomanid analogues for Chagas disease:Hit-to-lead studies reveal both in vitro and in vivo trypanocidal efficacy

Phenotypic screening of a 900 compound library of antitubercular nitroimidazole derivatives related to pretomanid against the protozoan parasite Trypanosoma cruzi (the causative agent for Chagas disease) identified several structurally diverse hits with an unknown mode of action. Following initial profiling, a first proof-of-concept in vivo study was undertaken, in which once daily oral dosing of a 7-substituted 2-nitroimidazooxazine analogue suppressed blood parasitemia to low or undetectable levels, although sterile cure was not achieved. Limited hit expansion studies alongside counter-screening of new compounds targeted at visceral leishmaniasis laid the foundation for a more in-depth assessment of the best leads, focusing on both drug-like attributes (solubility, metabolic stability and safety) and maximal killing of the parasite in a shorter timeframe. Comparative appraisal of one preferred lead (58) in a chronic infection mouse model, monitored by highly sensitive bioluminescence imaging, provided the first definitive evidence of (partial) curative efficacy with this promising nitroimidazooxazine class