Beyond Hermeneutics? Some Remarks on the Meaning and Scope of Hermeneutics

Hermeneutics would seem to be enjoying an unprecedented vogue in America today. A colleague of mine opined somewhat cynically at the hermeneutics symposium earlier this year in Lawrence, Kansas, that hermeneutics owed this popularity in part to the fact that it was a term vague enough to serve as a rallying point in the common battle against scientific reductionism, literary formalism, and positivist modes in sociology — or whatever else one might be against. This was borne out by Richard de George\u27s remark introducing the final panel at the meeting, that hermeneutics seemed to be many things to many people — a theory, a philosophy, a view of reality, a methodology, an approach, a hope, a promise, an ideology … it\u27s probably all of those, and more depending on which speaker we turn to and how we interpret what they say. He might have added hermeneutics as a slogan, as battle cry. Then he goes on to ask, In which of its guises does it have a future? He might have asked: In which of its guises is it a thing of the past? Significantly, his enumeration omitted precisely the sense of hermeneutics I will be advocating in this paper: hermeneutics as a field of study, a discipline, as general theory of interpretation. But just this definitional vagueness also makes it difficult to know what is being asserted in the claim of those who in the face of our enthusiasm demand that we go beyond hermeneutics. In what sense is it really possible to go beyond hermeneutics at all

On the importance of being finished

The publication of an increasing number of draft genome sequences presents problems that will only be resolved by improved search tools and by complete finishing of the sequences - and their deposition in publicly accessible databases

Improving nanopore read accuracy with the R2C2 method enables the sequencing of highly multiplexed full-length single-cell cDNA.

High-throughput short-read sequencing has revolutionized how transcriptomes are quantified and annotated. However, while Illumina short-read sequencers can be used to analyze entire transcriptomes down to the level of individual splicing events with great accuracy, they fall short of analyzing how these individual events are combined into complete RNA transcript isoforms. Because of this shortfall, long-distance information is required to complement short-read sequencing to analyze transcriptomes on the level of full-length RNA transcript isoforms. While long-read sequencing technology can provide this long-distance information, there are issues with both Pacific Biosciences (PacBio) and Oxford Nanopore Technologies (ONT) long-read sequencing technologies that prevent their widespread adoption. Briefly, PacBio sequencers produce low numbers of reads with high accuracy, while ONT sequencers produce higher numbers of reads with lower accuracy. Here, we introduce and validate a long-read ONT-based sequencing method. At the same cost, our Rolling Circle Amplification to Concatemeric Consensus (R2C2) method generates more accurate reads of full-length RNA transcript isoforms than any other available long-read sequencing method. These reads can then be used to generate isoform-level transcriptomes for both genome annotation and differential expression analysis in bulk or single-cell samples

Effects of biceps tension and superior humeral head translation on the glenoid labrum

We sought to understand the effects of superior humeral head translation and load of the long head of biceps on the pathomechanics of the superior glenoid labrum by predicting labral strain. Using micro‐CT cadaver images, a finite element model of the glenohumeral joint was generated, consisting of humerus, glenoid bone, cartilages, labrum, and biceps tendon. A glenohumeral compression of 50 N and biceps tensions of 0, 22, 55, and 88 N were applied. The humeral head was superiorly translated from 0 to 5 mm in 1‐mm increments. The highest labral strain occurred at the interface with the glenoid cartilage and bone beneath the origin of the biceps tendon. The maximum strain was lower than the reported failure strain. The humeral head motion had relatively greater effect than biceps tension on the increasing labral strain. This supports the mechanistic hypothesis that superior labral lesions result mainly from superior migration of the humeral head, but also from biceps tension. © 2014 Orthopaedic Research Society. Published by Wiley Periodicals, Inc. J Orthop Res 32:1424–1429, 2014.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/108670/1/jor22688.pd

Effects of biceps tension on the torn superior glenoid labrum

The purpose of this study was to evaluate the role of the tension on the long head of the biceps tendon in the propagation of SLAP tears by studying the mechanical behavior of the torn superior glenoid labrum. A previously validated finite element model was extended to include a glenoid labrum with type II SLAP tears of three different sizes. The strain distribution within the torn labral tissue with loading applied to the biceps tendon was investigated and compared to the inact and unloaded conditions. The anterior and posterior edges of each SLAP tear experienced the highest strain in the labrum. Labral strain increased with increasing biceps tension. This effect was stronger in the labrum when the size of the tear exceeded the width of the biceps anchor on the superior labrum. Thus, this study indicates that biceps tension influences the propagation of a SLAP tear more than it does the initiation of a tear. Additionally, it also suggests that the tear size greater than the biceps anchor site as a criterion in determining optimal treatment of a type II SLAP tear. © 2015 Orthopaedic Research Society. Published by Wiley Periodicals, Inc. J Orthop Res 33:1545–1551, 2015.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/113101/1/jor22888.pd

Formation and emission mechanisms of Ag nanoclusters in the Ar matrix assembly cluster source

In this paper, we study the mechanisms of growth of Ag nanoclusters in a solid Ar matrix and the emission of these nanoclusters from the matrix by a combination of experimental and theoretical methods. The molecular dynamics simulations show that the cluster growth mechanism can be described as "thermal spike-enhanced clustering" in multiple sequential ion impact events. We further show that experimentally observed large sputtered metal clusters cannot be formed by direct sputtering of Ag mixed in the Ar. Instead, we describe the mechanism of emission of the metal nanocluster that, at first, is formed in the cryogenic matrix due to multiple ion impacts, and then is emitted as a result of the simultaneous effects of interface boiling and spring force. We also develop an analytical model describing this size-dependent cluster emission. The model bridges the atomistic simulations and experimental time and length scales, and allows increasing the controllability of fast generation of nanoclusters in experiments with a high production rate.Peer reviewe

Towards production of novel catalyst powders from supported size-selected clusters by multilayer deposition and dicing

A multilayer deposition method has been developed with the potential to capture and process atomic clusters generated by a high flux cluster beam source. In this deposition mode a series of sandwich structures each consisting of three layers—a carbon support layer, cluster layer and polymer release layer—is sequentially deposited to form a stack of isolated cluster layers, as confirmed by through-focal aberration-corrected HAADF STEM analysis. The stack can then be diced into small pieces by a mechanical saw. The diced pieces are immersed in solvent to dissolve the polymer release layer and form small platelets of supported clusters

Molecular dynamics simulation of nanofilament breakage in neuromorphic nanoparticle networks

Neuromorphic computing systems may be the future of computing and cluster-based networks are a promising architecture for the realization of these systems. The creation and dissolution of synapses between the clusters are of great importance for their function. In this work, we model the thermal breakage of a gold nanofilament located between two gold nanoparticles via molecular dynamics simulations to study on the mechanisms of neuromorphic nanoparticle-based devices. We employ simulations of Au nanowires of different lengths ($2-8$ nm), widths ($0.4-0.8$ nm) and shapes connecting two Au$_{1415}$ nanoparticles (NPs) and monitor the evolution of the system via a detailed structural identification analysis. We found that atoms of the nanofilament gradually aggregate towards the clusters, causing the middle of the wire to gradually thin and then break. Most of the system remains crystalline during this process but the center is molten. The terminal NPs increase the melting point of the NWs by fixing the middle wire and act as recrystallization areas. We report a strong dependence on the width of the NWs, but also their length and structure. These results may serve as guidelines for the realization of cluster-based neuromorphic computing systems

Neuromorphic nanocluster networks: Critical role of the substrate in nano-link formation

Atomic cluster-based networks represent a promising architecture for the realization of neuromorphic computing systems, which may overcome some of the limitations of the current computing paradigm. The formation and breakage of synapses between the clusters are of utmost importance for the functioning of these computing systems. This paper reports the results of molecular dynamics simulations of synapse (bridge) formation at elevated temperatures and thermal breaking processes between 2.8 nanometer-sized Au$_{1415}$ clusters deposited on a carbon substrate, a model system. Crucially, we find that the bridge formation process is driven by the diffusion of gold atoms along the substrate, however small the gap between the clusters themselves. The complementary simulations of the bridge-breaking process reveal the existence of a threshold bias voltage to activate bridge rupture via Joule heating. These results provide an atomistic-level understanding of the fundamental dynamical processes occurring in neuromorphic cluster arrays

Morphology of the ferritin iron core by aberration corrected scanning transmission electron microscopy

As the major iron storage protein, ferritin stores and releases iron for maintaining the balance of iron in fauna, flora, and bacteria. We present an investigation of the morphology and iron loading of ferritin (from equine spleen) using aberration-corrected high angle annular dark field scanning transmission electron microscopy. Atom counting method, with size selected Au clusters as mass standards, was employed to determine the number of iron atoms in the nanoparticle core of each ferritin protein. Quantitative analysis shows that the nuclearity of iron atoms in the mineral core varies from a few hundred iron atoms to around 5000 atoms. Moreover, a relationship between the iron loading and iron core morphology is established, in which mineral core nucleates from a single nanoparticle, then grows along the protein shell before finally forming either a solid or hollow core structure