Assessing The Health Of Fringing Salt Marshes Along The Fore River And Its Tributaries

Casco Bay has experienced two significant oil spills in recent history - the Tamano Tanker spill in 1972 and the Julie N spill in 1996. In addition, the Fore River and its tributaries have experienced numerous small spills over the years, including the August 2002 fuel oil spill (2,900 gallons) and the April 2003 jet fuel spill (6,000 gallons). The impacts of these spills on the fringing salt marshes that line the edges of the Fore River and its tributaries are not well understood. Are these salt marshes resilient enough to withstand these impacts and still act as healthy marshes should? Or are they functioning at lower levels, compared to other fringing salt marshes in Casco Bay? The salt marshes that line the Fore River provide an important suite of functions and values to the citizens of southern Maine. The results of this study will help resource managers in their efforts to protect these important and unique natural resources

The Functions And Values Of Fringing Salt Marshes In Northern New England, USA

Although large salt marshes of the northeastern United States have been studied extensively, very little is known about the smaller, fringing marshes in this area, despite the fact that they are a common habitat type. We compared the functions and values of five fringing salt marshes (FM) to those of five meadow marshes (MM) along the southern Maine/New Hampshire coast. Specifically we compared their primary production, soil organic matter content, plant diversity, sediment trapping ability and wave dampening properties. Also explored were the relationships between these functions and several physical characteristics at each site, including soil salinity, percent surface slope, elevation and size. The results of this study indicate that despite their small size, fringing salt marshes are valuable components of estuaries, performing many ecological functions to the same degree as nearby meadow marshes. More effort should be made to include them in regional efforts to conserve and restore coastal habitats

Ecological Functions And Values Of Fringing Salt Marshes Susceptible To Oil Spills In Casco Bay, Maine

Casco Bay is the largest oil port in Maine and northern New England, handling over 20 million tons of crude oil and oil products annually. The susceptibility of the Bay’s estuarine habitats, especially its fringing salt marshes, to potential spill events was the impetus for this study. Although much has been learned to date about the effects of oil spills on estuarine habitats around the world, there is a real need for site-specific knowledge of the structures and functions of local habitats so that resource managers can be prepared in the event of a spill. Our study focused specifically on the value of Casco Bay’s fringing salt marshes to shellfish and finfish production, to vegetation production and diversity, and as buffers against sea level rise and coastal erosion. The work we have accomplished has been the first study of the fringing salt marshes of Casco Bay that has explored the biotic communities (fish, invertebrates and plants) of these marshes in conjunction with the physical properties of these sites. Knowledge of these local fringing salt marsh habitats will be invaluable in improving the effectiveness of oil spill cleanup operations, accurate assessment of natural resource damages caused by spills, and the restoration of impacted sites. In addition, the data acquired in this study provide an initial set of benchmarks upon which to build a program to assess long-term change in Casco Bay tidal marsh habitats

A Comprehensive Wetland Program For Fringing Salt Marshes In The York River, Maine

The overall goal of this project was to assist the Town of York, Maine, in its efforts to monitor and protect the fringing salt marshes along the York River. In particular, the project focused on potential impacts to the marshes due to shoreline development pressures. Specific objectives included (1) gathering baseline data about the marshes (2) developing a set of indicators to be used in future monitoring, and (3) generating management recommendations

Sigma factor n, liaison to an ntrC and rpoS dependent regulatory pathway controlling acid resistance and the LEE in enterohemorrhagic Escherichia coli

Enterohemorrhagic Escherichia coli (EHEC) is dependent on acid resistance for gastric passage and low oral infectious dose, and the locus of enterocyte effacement (LEE) for intestinal colonization. Mutation of rpoN, encoding sigma factor N (σ(N)), dramatically alters the growth-phase dependent regulation of both acid resistance and the LEE. This study reports on the determinants of σ(N)-directed acid resistance and LEE expression, and the underlying mechanism attributable to this phenotype. Glutamate-dependent acid resistance (GDAR) in TW14359ΔrpoN correlated with increased expression of the gadX-gadW regulatory circuit during exponential growth, whereas upregulation of arginine-dependent acid resistance (ADAR) genes adiA and adiC in TW14359ΔrpoN did not confer acid resistance by the ADAR mechanism. LEE regulatory (ler), structural (espA and cesT) and effector (tir) genes were downregulated in TW14359ΔrpoN, and mutation of rpoS encoding sigma factor 38 (σ(S)) in TW14359ΔrpoN restored acid resistance and LEE genes to WT levels. Stability, but not the absolute level, of σ(S) was increased in TW14359ΔrpoN; however, increased stability was not solely attributable to the GDAR and LEE expression phenotype. Complementation of TW14359ΔrpoN with a σ(N) allele that binds RNA polymerase (RNAP) but not DNA, did not restore WT levels of σ(S) stability, gadE, ler or GDAR, indicating a dependence on transcription from a σ(N) promoter(s) and not RNAP competition for the phenotype. Among a library of σ(N) enhancer binding protein mutants, only TW14359ΔntrC, inactivated for nitrogen regulatory protein NtrC, phenocopied TW14359ΔrpoN for σ(S) stability, GDAR and ler expression. The results of this study suggest that during exponential growth, NtrC-σ(N) regulate GDAR and LEE expression through downregulation of σ(S) at the post-translational level; likely by altering σ(S) stability or activity. The regulatory interplay between NtrC, other EBPs, and σ(N)-σ(S), represents a mechanism by which EHEC can coordinate GDAR, LEE expression and other cellular functions, with nitrogen availability and physiologic stimuli.Microbiology and Molecular Genetic

A mobile phone text messaging intervention to manage fatigue for people with multiple sclerosis, spinal cord injury, and stroke: Development and usability testing

BACKGROUND: Fatigue significantly affects daily functioning in persons with disabilities. Fatigue management can be challenging, and the information provided during routine physician visits to manage fatigue can be overwhelming. One way to address fatigue is to increase knowledge, skills, and confidence for self-management (ie, patient activation). Self-management programs have shown promising effects in targeting fatigue in persons with disabilities. However, satisfaction with self-management programs is low for persons with disabilities, and tailoring interventions to personalized needs has been recommended. SMS text messaging is increasingly being used to implement health behavior change interventions in a person\u27s natural environment. Little has been done to link mobile health approaches with patient activation and self-management to address fatigue in persons with disabilities. OBJECTIVE: This study aimed to develop and test a mobile phone-based fatigue self-management SMS text messaging intervention targeting patient activation in 3 groups of persons with disabilities: persons with multiple sclerosis, persons who had a stroke, and persons with a spinal cord injury. METHODS: We used evidence-based resources and input from a consumer advisory board (CAB; composed of 2 participants from each of the 3 disability groups) and a neurologist to develop the intervention. The study was conducted using a 4-step process: development of the initial SMS text messaging library and categorization of the content into 9 content areas, review and modification of the SMS text messages by the neurologist and CAB, integration of the content library into a digital platform, and utility testing by CAB members. RESULTS: A total of 6 CAB participants rated SMS text messages covering 9 domain areas of fatigue self-management with good clarity (mean ratings=3.5-5.0 out of 5) and relevance (mean ratings=3.2-5.0 out of 5). Overall, SMS text messaging content was reported by CAB participants as helpful, clear, and well suited for a mobile health intervention. The CAB reached consensus on the time of day that SMS text messages should be sent (morning) and their frequency (once per day). This feedback led the research team to narrow down the program to deliver 48 SMS text messages, 1 per day, Monday through Thursday only, a total of 4 SMS text messages per week, over a 12-week period. The final set of SMS text messages was programmed into a digital platform with a predefined delivery schedule. The usability of the intervention was high, with 55 (83%) out of 66 responses endorsing the highest rating. CONCLUSIONS: This study demonstrates a step-by-step process for developing a fatigue self-management SMS text messaging intervention for persons with disabilities. For this population, whose access to health services is often limited, this intervention provides an alternative delivery model to increase access to fatigue information and deliver content that aligns with the person\u27s needs

A Fire Severity Mapping System for Real-Time Fire Management Applications and Long-Term Planning: The FIRESEV project

Accurate, consistent, and timely fire severity maps are needed in all phases of fire management including planning, managing, and rehabilitating wildfires. The problem is that fire severity maps are commonly developed from satellite imagery that is difficult to use for planning wildfire responses before a fire has actually happened and can’t be used for real-time wildfire management because of the timing of the imagery delivery. Moreover, imagery is difficult to use for controlled fires such as prescribed burning. This study, called FIRESEV (FIRE SEVerity Mapping Tools) created a comprehensive set of tools and protocols to deliver, create, and evaluate fire severity maps for all phases of fire management. The first tool is a Severe Fire Potential Map (SFPM) that quantifies the potential for fires to burn with high severity, should they occur, for any 30m x 30m piece of ground across the western United States. This map was developed using empirical models that related topographic, vegetation, and fire weather variables to burn severity as mapped using the Monitoring Trends in Burn Severity (MTBS) digital products. This SFPM map is currently available on the Fire Research and Management Exchange System (FRAMES, http://www.frames.gov/firesev) web site and can be used to plan for future wildfires or for managing wildfires in real time, e.g. by including it as a layer in Wildland Fire Decision Support System or other GIS analysis. The next tool was the inclusion of a fire severity mapping algorithm in the Wildland Fire Assessment Tool (WFAT) developed by the National Interagency Fuels Technology Transfer (NIFTT) team. WFAT is used for fuel treatment planning to predict potential fire effects under prescribed fire weather conditions (http://www.frames.gov/partner-sites/niftt/tools/niftt-current-resources/). Now, fire severity can be mapped explicitly from fire effects simulation models (FOFEM, Consume) for real-time and planning wildfire applications. Next, the FIRESEV project showed how results from the WFAT simulated fire severity can be integrated with satellite imagery to improve fire severity mapping. And last, the FIRESEV project produced a suite of research studies, synthesis papers, and popular articles designed to improve the description, interpretation, and mapping of fire severity for wildland fire management: (1) a research study created a completely objective method of quantifying fire severity from fire effects to obtain nine unique classes of fire severity, (2) a research study comprehensively contrasted all current classifications of fire severity using Composite Burn Index (CBI) as measured on over 300 plots across the western United States to determine commonalities and differences, and (3) a synthesis paper was written discussing the problems involved in measuring, describing, and quantifying fire severity. This FIRESEV project yielded over 15 deliverables that we feel provides a comprehensive suite of products to create useful fire severity maps, along with current satellite imagery products, and also FIRESEV provides a thorough background on how to measure, interpret, and apply fire severity in fire management

Restoration of Topoisomerase 2 Function by Complementation of Defective Monomers in Drosophila

Type II topoisomerases are essential ATP-dependent homodimeric enzymes required for transcription, replication, and chromosome segregation. These proteins alter DNA topology by generating transient enzyme-linked double-strand breaks for passage of one DNA strand through another. The central role of type II topoisomerases in DNA metabolism has made these enzymes targets for anticancer drugs. Here, we describe a genetic screen that generated novel alleles of Drosophila Topoisomerase 2 (Top2). Fifteen alleles were obtained, resulting from nonsense and missense mutations. Among these, 14 demonstrated recessive lethality, with one displaying temperature-sensitive lethality. Several newly generated missense alleles carry amino acid substitutions in conserved residues within the ATPase, Topoisomerase/Primase, and Winged helix domains, including four that encode proteins with alterations in residues associated with resistance to cancer chemotherapeutics. Animals lacking zygotic Top2 function can survive to pupation and display reduced cell division and altered polytene chromosome structure. Inter se crosses between six strains carrying Top2 missense alleles generated morphologically normal trans-heterozygous adults, which showed delayed development and were female sterile. Complementation occurred between alleles encoding Top2 proteins with amino acid substitutions in the same functional domain and between alleles encoding proteins with substitutions in different functional domains. Two complementing alleles encode proteins with amino acid substitutions associated with drug resistance. These observations suggest that dimerization of mutant Top2 monomers can restore enzymatic function. Our studies establish the first series of Top2 alleles in a multicellular organism. Future analyses of these alleles will enhance our knowledge about the contributions made by type II topoisomerases to development

Immunization expands B cells specific to HIV-1 V3 glycan in mice and macaques.

Broadly neutralizing monoclonal antibodies protect against infection with HIV-1 in animal models, suggesting that a vaccine that elicits these antibodies would be protective in humans. However, it has not yet been possible to induce adequate serological responses by vaccination. Here, to activate B cells that express precursors of broadly neutralizing antibodies within polyclonal repertoires, we developed an immunogen, RC1, that facilitates the recognition of the variable loop 3 (V3)-glycan patch on the envelope protein of HIV-1. RC1 conceals non-conserved immunodominant regions by the addition of glycans and/or multimerization on virus-like particles. Immunization of mice, rabbits and rhesus macaques with RC1 elicited serological responses that targeted the V3-glycan patch. Antibody cloning and cryo-electron microscopy structures of antibody-envelope complexes confirmed that immunization with RC1 expands clones of B cells that carry the anti-V3-glycan patch antibodies, which resemble precursors of human broadly neutralizing antibodies. Thus, RC1 may be a suitable priming immunogen for sequential vaccination strategies in the context of polyclonal repertoires

Antibody elicited by HIV-1 immunogen vaccination in macaques displaces Env fusion peptide and destroys a neutralizing epitope

HIV-1 vaccine design aims to develop an immunogen that elicits broadly neutralizing antibodies against a desired epitope, while eliminating responses to off-target regions of HIV-1 Env. Here we report isolation and characterization of Ab1245, an off-target antibody against the Env gp120-gp41 interface, from V3-glycan patch immunogen-primed and boosted macaques. A 3.7 Å cryo-EM structure of an Ab1245-Env complex reveals one Ab1245 Fab binding asymmetrically to Env trimer at the gp120-gp41 interface using its long CDRH3 to mimic regions of gp41. The mimicry includes positioning of a CDRH3 methionine into the gp41 tryptophan clasp, resulting in displacement of the fusion peptide and fusion peptide-proximal region. Despite fusion peptide displacement, Ab1245 is non-neutralizing even at high concentrations, implying that only two fusion peptides per trimer are required for viral–host membrane fusion. These structural analyses facilitate immunogen design to prevent elicitation of Ab1245-like antibodies that block neutralizing antibodies against the fusion peptide