Electrochemical detection of the toxic dinoflagellate Alexandrium ostenfeldii with a DNA-biosensor

The steady rise of observations of harmful or toxic algal blooms throughout the world in the past decades constitute a menace for coastal ecosystems and human interests. As a consequence, a number of programs have been launched to monitor the occurrence of harmful and toxic algae. However, the identification is currently done by microscopic examination, which requires a broad taxonomic knowledge, expensive equipment and is very time consuming. In order to facilitate the identification of toxic algae, an inexpensive and easy-to-handle DNA-biosensor has been adapted for the electrochemical detection of the toxic dinoflagellate Alexandrium ostenfeldii. The detection of the toxic algae is based on a sandwich hybridisation, which is carried out on a disposable sensor chip. A set of two probes for the species specific identification of A. ostenfeldii was developed. The specificity of the probes could be shown in dot-blot hybridisation and with the DNA-biosensor. The sensitivity of the DNA-biosensor was optimised with respect to hybridisation temperature and NaCl-concentration and a significant increase of the sensitivity of the DNA-biosensor could be obtained by a fragmentation of the rRNA prior to the hybridisation and by adding a helper oligonucleotide, which binds in close proximity to the probes to the hybridisation

Uncovering hidden biodiversity in the Cryptophyta: New picoplanktonic clades from clone library studies at the Helgoland time series site in the southern German Bight.

Cryptophyceae are important group in marine phytoplankton, but little is known about the occurrence and distribution of individual species. Recently, with use of molecular probes and microarray technology, it has been shown that species related to Teleaulax spp. or Chroomonas spp. (clades 4 and 6) contributed most to cryptophyceam biomass in the North Sea. The probe for clades 4 and 6 cannot separate them and the single probe recognises members of both clades. Here, we increase the genetic diversity of our investigations of cryptophycean diversity in the North Sea by sequencing 18S rRNA clone libraries made from fractionated water samples to examine specifically the picoplanktonic fraction and to determine whether clade 4 or 6 were the dominant cyrptophytes. We focused on samples from the spring phytoplankton bloom in 2004 because the microarray signals were the strongest at this time. Excluding chimeric sequences, we detected nine cryptophycean OTUs, seven of which fell into the Teleaulax/ Plagioselmis branch, whereas two grouped with Geminigera spp. Our results indicate that these OTUs, affiliated with clade 4, may be an important component of cryptophyte community during spring bloom in the North Sea

Preliminary Results of a U.S. Deep South Modeling Experiment Using NASA SPoRT Initialization Datasets for Operational National Weather Service Local Model Runs

A joint collaborative modeling effort among the NWS offices in Mobile, AL, and Houston, TX, and NASA Short-term Prediction Research and Transition (SPoRT) Center began during the 2011-2012 cold season, and continued into the 2012 warm season. The focus was on two frequent U.S. Deep South forecast challenges: the initiation of deep convection during the warm season; and heavy precipitation during the cold season. We wanted to examine the impact of certain NASA produced products on the Weather Research and Forecasting Environmental Modeling System in improving the model representation of mesoscale boundaries such as the local sea-, bay- and land-breezes (which often leads to warm season convective initiation); and improving the model representation of slow moving, or quasi-stationary frontal boundaries (which focus cold season storm cell training and heavy precipitation). The NASA products were: the 4-km Land Information System, a 1-km sea surface temperature analysis, and a 4-km greenness vegetation fraction analysis. Similar domains were established over the southeast Texas and Alabama coastlines, each with an outer grid with a 9 km spacing and an inner nest with a 3 km grid spacing. The model was run at each NWS office once per day out to 24 hours from 0600 UTC, using the NCEP Global Forecast System for initial and boundary conditions. Control runs without the NASA products were made at the NASA SPoRT Center. The NCAR Model Evaluation Tools verification package was used to evaluate both the positive and negative impacts of the NASA products on the model forecasts. Select case studies will be presented to highlight the influence of the products

Bolidomonas: a new genus with two species belonging to a new algal class, the Bolidophyceae (Heterokonta) 1.

International audienceA new algal class, the Bolidophyceae (Heterokonta), is described from one genus, Bolidomonas, gen, nov., and two species, Bolidomonas pacifica, sp, nov and Bolidomonas mediterranea, sp, nov., isolated from the equatorial Pacific Ocean and the Mediterranean Sea, respectively. Both species are approximately 1.2 mu m in diameter and have two unequal flagella; the longer flagellum bears tubular hairs, whereas the shorter is smooth. The flagellar basal apparatus is restricted to two basal bodies, and there is no transitional helix. Cells are naked, devoid of walls or siliceous structures. The internal cellular organization is simple with a single plastid containing a ring genophore and a girdle lamella, one mitochondrion with tubular cristae, and one Golgi apparatus close to the basal bodies. The Mediterranean and the Pacific species differ in the insertion angle between their flagella and their pattern of swimming, these differences possibly being linked to each other. Analyses of the SSU rDNA gene place the two strains as a sister group to the diatoms, Moreover, pigment analyses confirm this position, as fucoxanthin is found as the major carotenoid in both lineages. These data strongly suggest that the ancestral heterokont that gave rise to the diatom lineage was probably a biflagellated unicell

Preliminary results of the MIDTAL project: a microarray chip to monitor toxic dinoflagellates in the Orkney Islands, U.K.

Harmful algae can cause economic damage to fisheries and tourism. Additionally, toxins produced by harmful algae and ingested via contaminated shellfish can be potentially fatal to humans. Monitoring these harmful algae can be difficult as determining cell morphology by light microscopy may be insufficient to give definitive species attribution. The goal of the EU FP7 project MIDTAL (microarrays for the detection of toxic algae) was to achieve rapid species identification using species specific probes for rRNA genes in a microarray chip format. Field samples from the Orkney Islands, an area of the U.K. that has a number of nuisance and toxic species were tested with the second generation of the microarray chip. Species specific probes were looked at for the toxin producing dinoflagellates Alexandrium tamarense Group III (North American clade) and Dinophysis acuta and also general class probes for Dinophyta, Heterokontaphyta and Prymnesiophyta over the course of a year. These were compared with light microscopy cell counts. A good agreement in determining presence and absence between the methods was found. The second generation microarray is potentially more sensitive than cell counts. However, further work is needed to ensure that the microarray signal for each species provides an accurate quantitative assessment

SEAM2011 Spacing Movements Inside Out

SEAM2011-Spacing Movements Outside, curated by Benedict Anderson and Margie Medlin, was a three week event that explored contemporary discourses in performance and design. It involved 45 participants in workshops delivered by international practitioners in the field, and also included public events, artist talks and an International 3 day Symposium of performative presentations and papers on a series of themes affecting and effecting choreography, dance, performance, visual art. The aim was to explore the way interdisciplinary practices can produce new understandings of stage spaces as potential places for new concepts in performance and audience engagement. The specific focus on performative presentation aimed to bring the experience and presence of the body to the core of making and thinking. The event was built around four themes - each open to multiple responses, and nevertheless conjectural analogies of the city, of materiality, of design and of the body: The activated body - new performative spaces; The city performed - trajectories, traces, topographies; The temporal, transitional and transformational - momentum, light, pulse; and Materials performed through the body, the body performed through materials: The Symposium was financed and supported by Critical Path, Interarts Program, Australia Council for the Arts, Arts NSW, University of Technology Sydney and Performance Space