A relational database for bibliometric analysis

In this article a relational database schema for a bibliometric database is developed. After the introduction explaining the motivation to use relational databases in bibliome-trics, an overview of the related literature is given. A review of typical bibliometric ques-tions serves as an informal requirement analysis. The database schema is developed as an entity-relationship diagram using the structural information typically found in scientific articles. Several SQL queries for the tasks presented in the requirement analysis show the usefulness of the developed database schema

Efficient Traffic Assignment for Public Transit Networks

We study the problem of computing traffic assignments for public transit networks: Given a public transit network and a demand (i.e. a list of passengers, each with associated origin, destination, and departure time), the objective is to compute the utilization of every vehicle. Efficient assignment algorithms are a core component of many urban traffic planning tools. In this work, we present a novel algorithm for computing public transit assignments. Our approach is based upon a microscopic Monte Carlo simulation of individual passengers. In order to model realistic passenger behavior, we base all routing decisions on travel time, number of transfers, time spent walking or waiting, and delay robustness. We show how several passengers can be processed during a single scan of the network, based on the Connection Scan Algorithm [Dibbelt et al., LNCS Springer 2013], resulting in a highly efficient algorithm. We conclude with an experimental study, showing that our assignments are comparable in terms of quality to the state-of-the-art. Using the parallelized version of our algorithm, we are able to compute a traffic assignment for more than ten million passengers in well below a minute, which outperforms previous works by more than an order of magnitude

Avian Immunome DB: an example of a user-friendly interface for extracting genetic information

BackgroundGenomic and genetic studies often require a target list of genes before conducting any hypothesis testing or experimental verification. With the ever-growing number of sequenced genomes and a variety of different annotation strategies, comes the potential for ambiguous gene symbols, making it cumbersome to capture the “correct” set of genes. In this article, we present and describe the Avian Immunome DB (Avimm) for easy gene property extraction as exemplified by avian immune genes. The avian immune system is characterised by a cascade of complex biological processes underlaid by more than 1000 different genes. It is a vital trait to study particularly in birds considering that they are a significant driver in spreading zoonotic diseases. With the completion of phase II of the B10K (“Bird 10,000 Genomes”) consortium’s whole-genome sequencing effort, we have included 363 annotated bird genomes in addition to other publicly available bird genome data which serve as a valuable foundation for Avimm.Construction and contentA relational database with avian immune gene evidence from Gene Ontology, Ensembl, UniProt and the B10K consortium has been designed and set up. The foundation stone or the “seed” for the initial set of avian immune genes is based on the well-studied model organism chicken (Gallus gallus). Gene annotations, different transcript isoforms, nucleotide sequences and protein information, including amino acid sequences, are included. Ambiguous gene names (symbols) are resolved within the database and linked to their canonical gene symbol. Avimm is supplemented by a command-line interface and a web front-end to query the database.Utility and discussionThe internal mapping of unique gene symbol identifiers to canonical gene symbols allows for an ambiguous gene property search. The database is organised within core and feature tables, which makes it straightforward to extend for future purposes. The database design is ready to be applied to other taxa or biological processes. Currently, the database contains 1170 distinct avian immune genes with canonical gene symbols and 612 synonyms across 363 bird species. While the command-line interface readily integrates into bioinformatics pipelines, the intuitive web front-end with download functionality offers sophisticated search functionalities and tracks the origin for each record. Avimm is publicly accessible at https://avimm.ab.mpg.de.publishe

Assessing the effects of a growing electric vehicle fleet using a microscopic travel demand model

The German government seeks to increase the number of electric vehicles (EV) in the German car fleet to one million by 2020. Since some characteristics of EVs differ from conventional cars, there is an increasing need to assess the various impacts of a growing EV fleet. In this work, we have focused on possible effects related to the field of transport. We identified three important aspects and evaluated them over a period of one week using the microscopic travel demand model mobiTopp. First, we modelled the potential EV user groups of the near future by developing an EV user model; this model considers both interest in EVs and suitability for EV usage. Second, we simulated the travel behaviour of EV users; we used an EV usage model to consider the restrictions of EVs in choice decisions and also compared the usage behaviour of EV and conventional cars users. Third, we analysed the power consumption of the simulated EVs and evaluated the load peaks based on the simulated travel patterns. Our results indicate that a growing EV fleet implies a more heterogeneous distribution of EVs among car owners. They also indicate that the trip chain length of battery electric vehicles (BEVs) is much lower than that of extended range electric vehicles (EREVs) and conventional cars on average