Mapping density, diversity and species-richness of the Amazon tree flora

Using 2.046 botanically-inventoried tree plots across the largest tropical forest on Earth, we mapped tree species-diversity and tree species-richness at 0.1-degree resolution, and investigated drivers for diversity and richness. Using only location, stratified by forest type, as predictor, our spatial model, to the best of our knowledge, provides the most accurate map of tree diversity in Amazonia to date, explaining approximately 70% of the tree diversity and species-richness. Large soil-forest combinations determine a significant percentage of the variation in tree species-richness and tree alpha-diversity in Amazonian forest-plots. We suggest that the size and fragmentation of these systems drive their large-scale diversity patterns and hence local diversity. A model not using location but cumulative water deficit, tree density, and temperature seasonality explains 47% of the tree species-richness in the terra-firme forest in Amazonia. Over large areas across Amazonia, residuals of this relationship are small and poorly spatially structured, suggesting that much of the residual variation may be local. The Guyana Shield area has consistently negative residuals, showing that this area has lower tree species-richness than expected by our models. We provide extensive plot meta-data, including tree density, tree alpha-diversity and tree species-richness results and gridded maps at 0.1-degree resolution

Consistent patterns of common species across tropical tree communities

Trees structure the Earth’s most biodiverse ecosystem, tropical forests. The vast number of tree species presents a formidable challenge to understanding these forests, including their response to environmental change, as very little is known about most tropical tree species. A focus on the common species may circumvent this challenge. Here we investigate abundance patterns of common tree species using inventory data on 1,003,805 trees with trunk diameters of at least 10 cm across 1,568 locations1,2,3,4,5,6 in closed-canopy, structurally intact old-growth tropical forests in Africa, Amazonia and Southeast Asia. We estimate that 2.2%, 2.2% and 2.3% of species comprise 50% of the tropical trees in these regions, respectively. Extrapolating across all closed-canopy tropical forests, we estimate that just 1,053 species comprise half of Earth’s 800 billion tropical trees with trunk diameters of at least 10 cm. Despite differing biogeographic, climatic and anthropogenic histories7, we find notably consistent patterns of common species and species abundance distributions across the continents. This suggests that fundamental mechanisms of tree community assembly may apply to all tropical forests. Resampling analyses show that the most common species are likely to belong to a manageable list of known species, enabling targeted efforts to understand their ecology. Although they do not detract from the importance of rare species, our results open new opportunities to understand the world’s most diverse forests, including modelling their response to environmental change, by focusing on the common species that constitute the majority of their trees

One sixth of Amazonian tree diversity is dependent on river floodplains

Amazonia's floodplain system is the largest and most biodiverse on Earth. Although forests are crucial to the ecological integrity of floodplains, our understanding of their species composition and how this may differ from surrounding forest types is still far too limited, particularly as changing inundation regimes begin to reshape floodplain tree communities and the critical ecosystem functions they underpin. Here we address this gap by taking a spatially explicit look at Amazonia-wide patterns of tree-species turnover and ecological specialization of the region's floodplain forests. We show that the majority of Amazonian tree species can inhabit floodplains, and about a sixth of Amazonian tree diversity is ecologically specialized on floodplains. The degree of specialization in floodplain communities is driven by regional flood patterns, with the most compositionally differentiated floodplain forests located centrally within the fluvial network and contingent on the most extraordinary flood magnitudes regionally. Our results provide a spatially explicit view of ecological specialization of floodplain forest communities and expose the need for whole-basin hydrological integrity to protect the Amazon's tree diversity and its function.Naturali

Reducing the environmental impact of surgery on a global scale: systematic review and co-prioritization with healthcare workers in 132 countries

Background Healthcare cannot achieve net-zero carbon without addressing operating theatres. The aim of this study was to prioritize feasible interventions to reduce the environmental impact of operating theatres. Methods This study adopted a four-phase Delphi consensus co-prioritization methodology. In phase 1, a systematic review of published interventions and global consultation of perioperative healthcare professionals were used to longlist interventions. In phase 2, iterative thematic analysis consolidated comparable interventions into a shortlist. In phase 3, the shortlist was co-prioritized based on patient and clinician views on acceptability, feasibility, and safety. In phase 4, ranked lists of interventions were presented by their relevance to high-income countries and low–middle-income countries. Results In phase 1, 43 interventions were identified, which had low uptake in practice according to 3042 professionals globally. In phase 2, a shortlist of 15 intervention domains was generated. In phase 3, interventions were deemed acceptable for more than 90 per cent of patients except for reducing general anaesthesia (84 per cent) and re-sterilization of ‘single-use’ consumables (86 per cent). In phase 4, the top three shortlisted interventions for high-income countries were: introducing recycling; reducing use of anaesthetic gases; and appropriate clinical waste processing. In phase 4, the top three shortlisted interventions for low–middle-income countries were: introducing reusable surgical devices; reducing use of consumables; and reducing the use of general anaesthesia. Conclusion This is a step toward environmentally sustainable operating environments with actionable interventions applicable to both high– and low–middle–income countries

Homologous recombination DNA repair defects in PALB2-associated breast cancers

Mono-allelic germline pathogenic variants in the Partner And Localizer of BRCA2 (PALB2) gene predispose to a high-risk of breast cancer development, consistent with the role of PALB2 in homologous recombination (HR) DNA repair. Here, we sought to define the repertoire of somatic genetic alterations in PALB2-associated breast cancers (BCs), and whether PALB2-associated BCs display bi-allelic inactivation of PALB2 and/or genomic features of HR-deficiency (HRD). Twenty-four breast cancer patients with pathogenic PALB2 germline mutations were analyzed by whole-exome sequencing (WES, n = 16) or targeted capture massively parallel sequencing (410 cancer genes, n = 8). Somatic genetic alterations, loss of heterozygosity (LOH) of the PALB2 wild-type allele, large-scale state transitions (LSTs) and mutational signatures were defined. PALB2-associated BCs were found to be heterogeneous at the genetic level, with PIK3CA (29%), PALB2 (21%), TP53 (21%), and NOTCH3 (17%) being the genes most frequently affected by somatic mutations. Bi-allelic PALB2 inactivation was found in 16 of the 24 cases (67%), either through LOH (n = 11) or second somatic mutations (n = 5) of the wild-type allele. High LST scores were found in all 12 PALB2-associated BCs with bi-allelic PALB2 inactivation sequenced by WES, of which eight displayed the HRD-related mutational signature 3. In addition, bi-allelic inactivation of PALB2 was significantly associated with high LST scores. Our findings suggest that the identification of bi-allelic PALB2 inactivation in PALB2-associated BCs is required for the personalization of HR-directed therapies, such as platinum salts and/or PARP inhibitors, as the vast majority of PALB2-associated BCs without PALB2 bi-allelic inactivation lack genomic features of HRD.Anqi Li … Gelareh Farshid … Grantley Gill … Eric Haan … James Kollias … et al

Temperatura base para aparecimento de folhas e filocrono da variedade de milho BRS Missões Base temperature for leaf appearance and phyllochron of the BRS Missões maize variety

O objetivo deste trabalho foi estimar a temperatura base para aparecimento de folhas e o filocrono em uma variedade de milho em várias datas de semeadura e dois anos de cultivo. Um experimento de campo foi realizado em Santa Maria, Rio Grande do Sul (RS), com sete datas de semeadura. Foi utilizada a variedade BRS Missões em dois anos agrícolas consecutivos (2005-06 e 2006-07). O delineamento experimental foi blocos ao acaso com seis repetições. A parcela foi composta por três linhas de 5m de comprimento no espaçamento 0,8m x 0,21m. Em cada parcela, foram marcadas ao acaso três plantas na linha central nas quais foi realizada semanalmente a contagem do número de folhas completamente expandidas (NFE) e o total (NFT). A temperatura base variou entre épocas de semeadura de 4,5 a 12&deg;C, com média próxima de 8&deg;C, valor que foi usado no cálculo da soma térmica. O filocrono foi maior quando calculado com base no NFE do que com base no NFT e variou com a data de semeadura, de 50,0 a 69,9&deg;C dia folha-1 e de 39,6 a 59,8&deg;C dia folha-1, respectivamente, sendo o fotoperíodo uma possível causa da variação do filocrono entre épocas.<br>The objective of this study was to estimate the base temperature for leaf appearance and the phyllochron of a maize variety in several sowing dates and two growing seasons. A field experiment was conducted in Santa Maria, RS, with seven sowing dates using the BRS Missões variety in two growing seasons (2005-06 and 2006-07). The experimental design was a completely randomized blocks, with six replications. Plots were three 5 m rows in a 0.8m x 0.21m spacing. Three plants in the central row of each plot were randomly tagged, and the number of fully expanded leaves (NFE) and the number of leaf tips (NFT) were counted once a week on the tagged plants. The base temperature varied with sowing date from 4.5 to 12&deg;C and an average of about 8&deg;C was used to calculate thermal time. Phyllochron was higher when calculated on an NFE basis than on a NFT basis, and varied with sowing date from 50.0 to 69.9&deg;C day leaf-1 and from 39.6 to 59.8&deg;C day leaf-1, respectively, with photoperiod being a likely cause to explain the variation in the phyllochron with sowing date

Amido no megagametófito de Araucaria angustifolia (Bert.) O. Ktze: degradação durante a germinação e desenvolvimento do esporófito Starchy reserve of the megagametophyte of Araucaria angustifolia (Bert.) O. Ktze: mobilization during germination and on the developing sporophyte

O pinheiro brasileiro possui um diásporo de grandes dimensões, o pinhão, rico em reservas amiláceas. A mobilização dessas reservas pelo embrião foi quantificada em secções transversais do megagametófito, em cinco estágios de desenvolvimento da plântula, sob dois tratamentos, na luz e no escuro. Na luz, o consumo das reservas do megagametófito pela plântula é mais rápido do que no escuro e, existe uma tendência ao consumo do amido realizar-se primeiro na região do megagametófito próxima ao embrião.<br>The parana pine has a very large dispore, the "pinhão", rich in starchy reserves. The mobilization of these reserves by the embryo was quantified in transversal sections of the megagametophyte, in five stages of seedling development, sampled in the light and in the darkness. The consuption of starch grains was in plantlets grown in light than those grown in darkness. There was a tendency to quicker use up of the the megagametophyte starch near to embryo