SUPPA2:fast, accurate, and uncertainty-aware differential splicing analysis across multiple conditions

Supplementary methods. (PDF 315 kb

Supplemental Dataset 1

Results of the analysis of differentially expressed, differentially alternatively spliced and differential transcript usage

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Primers used in this study

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Isoform switch and AS events analyses of transcripts from DAS genes

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Summary of RNA-seq data derived from Arabidopsis rosettes time-series cold response study

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Gene Ontology (GO) enrichment analysis of DE genes and DAS genes

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AS data for the u2b’’-like HR RT-PCR analysis panel

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Transcript expression in the Arabidopsis cold respons

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List of Arabidopsis Transcription Factor and SF-RBP genes

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Genes in DE and DTU heatmap clusters and Gene Ontology (GO) enrichment analysis of individual heatmap DE gene clusters