MOESM1 of Time-resolved transcriptome analysis and lipid pathway reconstruction of the oleaginous green microalga Monoraphidium neglectum reveal a model for triacylglycerol and lipid hyperaccumulation

Additional file 1. Additional Methods, Results, Tables ST1–ST3 and Figures S1–S17

Additional file 1: of Physiological roles of sigma factor SigD in Corynebacterium glutamicum

Table S1. Bacterial strains, plasmids and oligonucleotides used in this work. Bacterial strains, plasmids and oligonucleotides used in this work are listed. (DOCX 17 kb

MOESM1 of Highly efficient methane generation from untreated microalgae biomass

Additional file 1: Figure S1. Methane concentration in the biogas, produced during the fermentation of replete-N and low-N algae biomass (replete-N BM and low-N BM, respectlively). Statistics: two-sample t-test with 95% confidence interval. Figure S2. Concentration of total carbon and nitrogen during the experimental time course in replete-N BM digester (A) and low-N BM digester (B). Concentration of total organic and inorganic carbon (TOC and TIC) is shown for replete-N BM digester (C) and low-N BM digester (D). Measurements were performed in three replicates; error bars represent standard deviation (SD). Figure S3. Concentration of volatile and total solids (VS and TS, respectively) during the experimental time course in replete-N BM digester (A) and low-N BM digester (B). Measurements were performed in at least three replicates; error bars represent standard deviation (SD). Figure S4. Concentration of chemical oxygen demand (COD) during the experimental time course in replete-N BM digester (A) and low-N BM digester (B). Measurements were performed in three technical replicates; error bars represent standard deviation (SD). Figure S5. Bacterial diversity dynamics as assessed by high-throughput 16S rRNA amplicon sequencing and represented at the OTU level. The reactors, fed with biomass cultivated in media with replete and low nitrogen content (replete-N BM and low-N BM) were exposed to increasing organic loading rates of 2 and 4 g VS L-1 d-1 (OLR 2 and OLR 4, respectively). The inoculum and the sampling periods at the end of each OLR were chosen for microbial community monitoring. Table S1. Analysis of the volatile fatty acid (VFA) content during the time course of the experiment. The identification and quantification of the intermediate fermentation products (mM) was determined via GC-FID. The indicated error (Âą) represents standard deviation (SD, n = 2). Table S2. Filtered sequences during amplicon processing. OTU=operational taxonomic unit, N=nitrogen, sd=standard deviation, OLR=organic loading rate, rep=replicate

Additional file 1: Table S1. of De novo assembly of the dual transcriptomes of a polymorphic raptor species and its malarial parasite

Sample sizes used for qPCR according to the morph of the donor buzzard and the body region of sampling. For two light and one intermediate birds both ventral and dorsal feathers were available. (DOC 29 kb

Additional file 4: Table S4. of Transcriptome sequencing of the human pathogen Corynebacterium diphtheriae NCTC 13129 provides detailed insights into its transcriptional landscape and into DtxR-mediated transcriptional regulation

List of intragenic and antisense TSS. (XLSX 15 kb

Additional file 7: Table S7. of Transcriptome sequencing of the human pathogen Corynebacterium diphtheriae NCTC 13129 provides detailed insights into its transcriptional landscape and into DtxR-mediated transcriptional regulation

List of operons, sub-operons and monocistrons. (XLSX 38 kb

Additional file 6: of An assemblage of Frankia Cluster II strains from California contains the canonical nod genes and also the sulfotransferase gene nodH

GlnA sequences used for the phylogenetic tree depicted in Fig. 5. (XLSX 26 kb

Additional file 3: of Comparative genomics reveals phylogenetic distribution patterns of secondary metabolites in Amycolatopsis species

Table S2. Basic features of Amycolatopsis genomes. (DOCX 110 kb

Additional file 1: of Comparative genomics reveals phylogenetic distribution patterns of secondary metabolites in Amycolatopsis species

Supplementary Figures. Figure S1-S13 (PDF 6871 kb

Additional file 1: Figure S1. of Isolation and genome sequencing of four Arctic marine Psychrobacter strains exhibiting multicopper oxidase activity

Dot plot analysis of chromosomal DNA sequences. A) P2G3 vs P11G3, B) P11F6 vs P2G3, C) P2G3 vs P11G5, D) P11F6 vs P11G3, E) P11F6 vs P11G5, F) P11G3 vs P11G5. (PDF 125 kb