Role of CPEB in Senescence and Inflammation: A Dissertation

Cytoplasmic polyadenylation element-binding protein (CPEB) is a sequence-specific RNA-binding protein that promotes polyadenylation-induced translation. While a CPEB knockout (KO) mouse is sterile but overtly normal, embryo fibroblasts derived from this mouse (MEFs) do not enter senescence in culture as do wild-type MEFs, but instead are immortal. Exogenous CPEB restores senescence in the KO MEFs and also induces precocious senescence in wild-type MEFs. CPEB cannot stimulate senescence in MEFs lacking the tumor suppressors p53, p19ARF, or p16INK4A; however, the mRNAs encoding these proteins are unlikely targets of CPEB since their expression is the same in wild-type and KO MEFs. Conversely, Ras cannot induce senescence in MEFs lacking CPEB, suggesting that it may lie upstream of CPEB. One target of CPEB regulation is myc mRNA, whose unregulated translation in the KO MEFs may cause them to bypass senescence. Thus, CPEB appears to act as a translational repressor protein to control myc translation and resulting cellular senescence. CPEB is a sequence-specific RNA binding protein that regulates cytoplasmic polyadenylation-induced translation. We report here that CPEB KO mice are hypersensitive to LPS-induced endotoxic shock, which correlates with elevated serum levels of the proinflammatory cytokines IL-6, IL-8 and IL-12. Peritoneal macrophages from the KO mice, as well as a CPEB-depleted macrophage cell line, not only secrete more IL-6 than control cells in response to LPS, but also have prolonged retention of NFϰB in the nucleus, which is responsible for elevated IL-6 transcription. The amount of nuclear NFϰB correlates with reduced levels of IϰBα, which is hyperphosphorylated and rapidly degraded. Collectively, these data suggest that CPEB deficiency enhances the inflammatory response via delayed resolution of NFϰB signaling

Patterns in Knot Floer Homology

Based on the data of 12-17-crossing knots, we establish three new conjectures about the hyperbolic volume and knot cohomology: (1) There exists a constant $a \in R_{>0}$ such that $\log r(K) < a \cdot Vol(K)$ for all knots $K$ where $r(K)$ is the total rank of knot Floer homology (KFH) of $K$ and $Vol(K)$ is the hyperbolic volume of $K$. (2) Fix a small cut-off value $d$ of the total rank of KFH and let $f(x)$ be defined as the fraction of knots whose total rank of knot Floer homology is less than $d$ among the knots whose hyperbolic volume is less than $x$. Then for sufficiently large crossing numbers, the following inequality holds: $f(x)<\frac{L}{1+\exp{(-k \cdot (x-x_0))}} + b$ where $L, x_0, k, b$ are constants. (3) There exist constants $a, b \in R$ such that $\log \det(K) < a \cdot Vol(K) + b$ for all knots $K$ where $det(K)$ is the knot determinant of $K$.Comment: The dataset is available on Zenodo (doi.org/10.5281/zenodo.7879466). The code is available on GitHub (github.com/eivshina/ patterns-in-knot-floer-homology

Open resources and controlled from distance educational technologies are in engineering education

Работа посвящена изучению опыта применения открытых образовательных ресурсов и дистанционных образовательных технологий в инженерном образовании за рубежом и в России. Описаны основные проблемы создания и внедрения системы электронного обучения в инженерное образование.The work is devoted to studying the experience of the application of open educational resources in engineering education abroad and in Russia. The basic a problem of the creation and implementation of e-learning in engineering education

Distance learning technologies in open education: the experience of the Kazan federal university

The paradigm of open education is considered from the practical point of view on the example of the implementation of the Kazan Federal University. Given the results of creation and introduction of the system of distance learning as the basis of open education.Парадигма открытого образования рассмотрена с практической точки зрения на примере реализации в Казанском федеральном университете. Приведены результаты создания и внедрения системы дистанционного обучения как основы открытого образования

Centrosome-intrinsic mechanisms modulate centrosome integrity during fever

The centrosome is critical for cell division, ciliogenesis, membrane trafficking, and immunological synapse function. The immunological synapse is part of the immune response, which is often accompanied by fever/heat stress (HS). Here we provide evidence that HS causes deconstruction of all centrosome substructures primarily through degradation by centrosome-associated proteasomes. This renders the centrosome nonfunctional. Heat-activated degradation is centrosome selective, as other nonmembranous organelles (midbody, kinetochore) and membrane-bounded organelles (mitochondria) remain largely intact. Heat-induced centrosome inactivation was rescued by targeting Hsp70 to the centrosome. In contrast, Hsp70 excluded from the centrosome via targeting to membranes failed to rescue, as did chaperone inactivation. This indicates that there is a balance between degradation and chaperone rescue at the centrosome after HS. This novel mechanism of centrosome regulation during fever contributes to immunological synapse formation. Heat-induced centrosome inactivation is a physiologically relevant event, as centrosomes in leukocytes of febrile patients are disrupted. Cell Biology under license from the author(s)

Cell Adaptations of Rhodococci to Pharmaceutical Pollutants

Against the background of atense environmental situation, the risk of drug pollution in the natural environment is steadily increasing. Pharmaceuticals entering open ecosystems can cause toxic effects in wildlife from molecular to population levels. The aim of this research was to examine the impact of pharmaceutical pollutants on rhodococci, which are typical representatives of soil actinobacteria and active biodegraders of these compounds. The pharmaceutical products used in this research werediclofenac sodium and ibuprofen, which are non-steroidal anti-inflammatory drugs (NSAIDs) that are widely used and frequently found in the environment. The most common cell adaptations of rhodococci to the effects of NSAIDs were changes in zeta potential, catalase activity, morphometric parameters and degree of hydrophobicity; elevated contents of total cellular lipids; and the formation of cell conglomerates. The findings demonstrated the adaptation mechanisms of rhodococci and their increased resistance to the toxic effects of the pharmaceutical pollutants. Keywords: pharmaceutical pollutants, NSAIDs, diclofenac, ibuprofen, cell responses, Rhodococcu

In vitro FRAP reveals the ATP-dependent nuclear mobilization of the exon junction complex protein SRm160

We present a new in vitro system for characterizing the binding and mobility of enhanced green fluorescent protein (EGFP)-labeled nuclear proteins by fluorescence recovery after photobleaching in digitonin-permeabilized cells. This assay reveals that SRm160, a splicing coactivator and component of the exon junction complex (EJC) involved in RNA export, has an adenosine triphosphate (ATP)-dependent mobility. Endogenous SRm160, lacking the EGFP moiety, could also be released from sites at splicing speckled domains by an ATP-dependent mechanism. A second EJC protein, RNPS1, also has an ATP-dependent mobility, but SRm300, a protein that binds to SRm160 and participates with it in RNA splicing, remains immobile after ATP supplementation. This finding suggests that SRm160-containing RNA export, but not splicing, complexes have an ATP-dependent mobility. We propose that RNA export complexes have an ATP-regulated mechanism for release from binding sites at splicing speckled domains. In vitro fluorescence recovery after photobleaching is a powerful tool for identifying cofactors required for nuclear binding and mobility

Features of the Bioconversion of Pentacyclic Triterpenoid Oleanolic Acid Using Rhodococcus Actinobacteria

The ability of actinobacteria of the genus Rhodococcus to transform oleanolic acid (OA), a plant pentacyclic triterpenoid, was shown for the first time using bioresources of the Regional Specialized Collection of AlkanotrophicMicroorganisms (IEGM; WDCM #768;www.iegmcol.ru). The most promising strains (R.opacus IEGM 488 and R.rhodochrousIEGM 285) were selected, and these catalyzed80% bioconversion of OA (0.5 g/L) in the presence of n-hexadecane (0.1% v/v) for seven days. The process of OA bioconversion was accompanied by a gradual decrease in the culture medium pH. Adaptive responses of bacterial cells to the OA effects included the formation of compact cellular aggregates, a marked change in the surface-to-volume ratio of cells, and a significant increase in the Zeta potential values. The results demonstrated that the process of OA bioconversion was catalyzed by membrane-bound enzyme complexes. Participation of cytochrome P450-dependent monooxygenases in the oxidation of the OA moleculewas confirmedusing specific inhibitors. The obtained data expand our knowledge on the catalytic activity of actinobacteria of the genus Rhodococcus and their possible use as biocatalysts for the bioconversion of complex hydrophobic compounds. The results can also be used inthe searchfor promising OA derivatives to be used in the synthesis of biologically active agents. Keywords: bioconversion, oleanolic acid, Rhodococcus, biologically active compound

Essential role for non-canonical poly(A) polymerase GLD4 in cytoplasmic polyadenylation and carbohydrate metabolism

Regulation of gene expression at the level of cytoplasmic polyadenylation is important for many biological phenomena including cell cycle progression, mitochondrial respiration, and learning and memory. GLD4 is one of the non-canonical poly(A) polymerases that regulates cytoplasmic polyadenylation-induced translation, but its target mRNAs and role in cellular physiology is not well known. To assess the full panoply of mRNAs whose polyadenylation is controlled by GLD4, we performed an unbiased whole genome-wide screen using poy(U) chromatography and thermal elution. We identified hundreds of mRNAs regulated by GLD4, several of which are involved in carbohydrate metabolism including GLUT1, a major glucose transporter. Depletion of GLD4 not only reduced GLUT1 poly(A) tail length, but also GLUT1 protein. GLD4-mediated translational control of GLUT1 mRNA is dependent of an RNA binding protein, CPEB1, and its binding elements in the 3 UTR. Through regulating GLUT1 level, GLD4 affects glucose uptake into cells and lactate levels. Moreover, GLD4 depletion impairs glucose deprivation-induced GLUT1 up-regulation. In addition, we found that GLD4 affects glucose-dependent cellular phenotypes such as migration and invasion in glioblastoma cells. Our observations delineate a novel post-transcriptional regulatory network involving carbohydrate metabolism and glucose homeostasis mediated by GLD4