Robust nuclear lamina-based cell classification of aging and senescent cells

Changes in the shape of the nuclear lamina are exhibited in senescent cells, as well as in cells expressing mutations in lamina genes. To identify cells with defects in the nuclear lamina we developed an imaging method that quantifies the intensity and curvature of the nuclear lamina. We show that this method accurately describes changes in the nuclear lamina. Spatial changes in nuclear lamina coincide with redistribution of lamin A proteins and local reduction in protein mobility in senescent cell. We suggest that local accumulation of lamin A in the nuclear envelope leads to bending of the structure. A quantitative distinction of the nuclear lamina shape in cell populations was found between fresh and senescent cells, and between primary myoblasts from young and old donors. Moreover, with this method mutations in lamina genes were significantly distinct from cells with wild-type genes. We suggest that this method can be applied to identify abnormal cells during aging, in in vitro propagation, and in lamina disorders

Carbon-grain sublimation: a new top-down component of protostellar chemistry

Earth's carbon deficit has been an outstanding problem in our understanding of the formation of our Solar System. A possible solution would be the sublimation of carbon grains at the so-called soot line (~300 K) early in the planet-formation process. Here, we argue that the most likely signatures of this process are an excess of hydrocarbons and nitriles inside the soot line, and a higher excitation temperature for these molecules compared to oxygen-bearing complex organics that desorb around the water snowline (~100 K). Such characteristics have been reported in the literature, for example, in Orion KL, although not uniformly, potentially due to differences in observational settings and analysis methods of different studies or related to the episodic nature of protostellar accretion. If this process is active, this would mean that there is a heretofore unknown component to the carbon chemistry during the protostellar phase that is acting from the top down - starting from the destruction of larger species - instead of from the bottom up from atoms. In the presence of such a top-down component, the origin of organic molecules needs to be re-explored.Comment: Accepted for publication in ApJL. 14 pages, 2 figures, 1 table (4 pages

The young embedded disk L1527 IRS: constraints on the water snowline and cosmic ray ionization rate from HCO+ observations

The water snowline in circumstellar disks is a crucial component in planet formation, but direct observational constraints on its location remain sparse due to the difficulty of observing water in both young embedded and mature protoplanetary disks. Chemical imaging provides an alternative route to locate the snowline, and HCO$^+$ isotopologues have been shown to be good tracers in protostellar envelopes and Herbig disks. Here we present $\sim$0.5$^{\prime\prime}$ resolution ($\sim$35 au radius) Atacama Large Millimeter/submillimeter Array (ALMA) observations of HCO$^+$ $J=4-3$ and H$^{13}$CO$^+$ $J=3-2$ toward the young (Class 0/I) disk L1527 IRS. Using a source-specific physical model with the midplane snowline at 3.4 au and a small chemical network, we are able to reproduce the HCO$^+$ and H$^{13}$CO$^+$ emission, but for HCO$^+$ only when the cosmic ray ionization rate is lowered to $10^{-18}$ s$^{-1}$. Even though the observations are not sensitive to the expected HCO$^+$ abundance drop across the snowline, the reduction in HCO$^+$ above the snow surface and the global temperature structure allow us to constrain a snowline location between 1.8 and 4.1 au. Deep observations are required to eliminate the envelope contribution to the emission and to derive more stringent constraints on the snowline location. Locating the snowline in young disks directly with observations of H$_2$O isotopologues may therefore still be an alternative option. With a direct snowline measurement, HCO$^+$ will be able to provide constraints on the ionization rate.Comment: Accepted for publication in ApJ, 15 pages, 6 figures and appendi

Imaging the water snowline in a protostellar envelope with H13^{13}CO+^+

Snowlines are key ingredients for planet formation. Providing observational constraints on the locations of the major snowlines is therefore crucial for fully connecting planet compositions to their formation mechanism. Unfortunately, the most important snowline, that of water, is very difficult to observe directly in protoplanetary disks due to its close proximity to the central star. Based on chemical considerations, HCO$^+$ is predicted to be a good chemical tracer of the water snowline, because it is particularly abundant in dense clouds when water is frozen out. This work maps the optically thin isotopologue H$^{13}$CO$^+$ ($J=3-2$) toward the envelope of the low-mass protostar NGC1333-IRAS2A (observed with NOEMA at ~0.9" resolution), where the snowline is at larger distance from the star than in disks. The H$^{13}$CO$^+$ emission peaks ~2" northeast of the continuum peak, whereas the previously observed H$_2^{18}$O shows compact emission on source. Quantitative modeling shows that a decrease in H$^{13}$CO$^+$ abundance by at least a factor of six is needed in the inner ~360 AU to reproduce the observed emission profile. Chemical modeling predicts indeed a steep increase in HCO$^+$ just outside the water snowline; the 50% decrease in gaseous H$_2$O at the snowline is not enough to allow HCO$^+$ to be abundant. This places the water snowline at 225 AU, further away from the star than expected based on the 1D envelope temperature structure for NGC1333-IRAS2A. In contrast, DCO$^+$ observations show that the CO snowline is at the expected location, making an outburst scenario unlikely. The spatial anticorrelation of the H$^{13}$CO$^+$ and H$_2^{18}$O emission provide a proof of concept that H$^{13}$CO$^+$ can be used as a tracer of the water snowline.Comment: 10 pages, 8 figures, 3 tables. Accepted for publication in A&

Temperature structures of embedded disks: young disks in Taurus are warm

The chemical composition of gas and ice in disks around young stars set the bulk composition of planets. In contrast to protoplanetary disks (Class II), young disks that are still embedded in their natal envelope (Class 0 and I) are predicted to be too warm for CO to freeze out, as has been confirmed observationally for L1527 IRS. To establish whether young disks are generally warmer than their more evolved counterparts, we observed five young (Class 0/I and Class I) disks in Taurus with the Atacama Large Millimeter/submillimeter Array (ALMA), targeting C$^{17}$O $2-1$, H$_2$CO $3_{1,2}-2_{1,1}$, HDO $3_{1,2}-2_{2,1}$ and CH$_3$OH $5_K-4_K$ transitions at $0.48^{\prime\prime} \times 0.31^{\prime\prime}$ resolution. The different freeze-out temperatures of these species allow us to derive a global temperature structure. C$^{17}$O and H$_2$CO are detected in all disks, with no signs of CO freeze-out in the inner $\sim$100 au, and a CO abundance close to $\sim$10$^{-4}$. H$_2$CO emission originates in the surface layers of the two edge-on disks, as witnessed by the especially beautiful V-shaped emission pattern in IRAS~04302+2247. HDO and CH$_3$OH are not detected, with column density upper limits more than 100 times lower than for hot cores. Young disks are thus found to be warmer than more evolved protoplanetary disks around solar analogues, with no CO freeze-out (or only in the outermost part of $\gtrsim$100 au disks) or CO processing. However, they are not as warm as hot cores or disks around outbursting sources, and therefore do not have a large gas-phase reservoir of complex molecules.Comment: Accepted for publication in ApJ. 19 pages, 11 figures, 3 tables (+ appendix

The VLA/ALMA Nascent Disk and Multiplicity (VANDAM) Survey of Orion Protostars IV. Unveiling the Embedded Intermediate-Mass Protostar and Disk within OMC2-FIR3/HOPS-370

We present ALMA (0.87~mm and 1.3~mm) and VLA (9~mm) observations toward the candidate intermediate-mass protostar OMC2-FIR3 (HOPS-370; L$_{bol}$~314~L$_{\odot}$) at $\sim$0.1" (40~au) resolution for the continuum emission and ~0.25" (100 au) resolution of nine molecular lines. The dust continuum observed with ALMA at 0.87~mm and 1.3~mm resolve a near edge-on disk toward HOPS-370 with an apparent radius of ~100 au. The VLA observations detect both the disk in dust continuum and free-free emission extended along the jet direction. The ALMA observations of molecular lines (H$_2$CO, SO, CH$_3$OH, $^{13}$CO, C$^{18}$O, NS, and H$^{13}$CN) reveal rotation of the apparent disk surrounding HOPS-370 orthogonal to the jet/outflow direction. We fit radiative transfer models to both the dust continuum structure of the disk and molecular line kinematics of the inner envelope and disk for the H$_2$CO, CH$_3$OH, NS, and SO lines. The central protostar mass is determined to be $\sim$2.5 M_sun with a disk radius of $\sim$94~au, when fit using combinations of the H$_2$CO, CH$_3$OH, NS, and SO lines, consistent with an intermediate-mass protostar. Modeling of the dust continuum and spectral energy distribution (SED) yields a disk mass of 0.035~M$_{\odot}$ (inferred dust+gas) and a dust disk radius of 62~au, thus the dust disk may have a smaller radius than the gas disk, similar to Class II disks. In order to explain the observed luminosity with the measured protostar mass, HOPS-370 must be accreting at a rate between 1.7 and 3.2$\times$10$^{-5}$~M$_{\odot}$~yr$^{-1}$.Comment: Accepted to ApJ; 51 pages, 12 Figures, 7 Table