Information-Theoretic and Algorithmic Thresholds for Group Testing

In the group testing problem we aim to identify a small number of infected individuals within a large population. We avail ourselves to a procedure that can test a group of multiple individuals, with the test result coming out positive iff at least one individual in the group is infected. With all tests conducted in parallel, what is the least number of tests required to identify the status of all individuals? In a recent test design [Aldridge et al. 2016] the individuals are assigned to test groups randomly, with every individual joining an equal number of groups. We pinpoint the sharp threshold for the number of tests required in this randomised design so that it is information-theoretically possible to infer the infection status of every individual. Moreover, we analyse two efficient inference algorithms. These results settle conjectures from [Aldridge et al. 2014, Johnson et al. 2019]

The Full Rank Condition for Sparse Random Matrices

We derive a sufficient condition for a sparse random matrix with given numbers of non-zero entries in the rows and columns having full row rank. Inspired by low-density parity check codes, the family of random matrices that we investigate is very general and encompasses both matrices over finite fields and {0,1}-matrices over the rationals. The proof combines statistical physics-inspired coupling techniques with local limit arguments

Random perturbation of sparse graphs

In the model of randomly perturbed graphs we consider the union of a deterministic graph Gα with minimum degree αn and the binomial random graph G(n, p). This model was introduced by Bohman, Frieze, and Martin and for Hamilton cycles their result bridges the gap between Dirac’s theorem and the results by Pósa and Korshunov on the threshold in G(n, p). In this note we extend this result in Gα ∪G(n, p) to sparser graphs with α = o(1). More precisely, for any ε > 0 and α: N ↦→ (0, 1) we show that a.a.s. Gα ∪ G(n, β/n) is Hamiltonian, where β = −(6 + ε) log(α). If α > 0 is a fixed constant this gives the aforementioned result by Bohman, Frieze, and Martin and if α = O(1/n) the random part G(n, p) is sufficient for a Hamilton cycle. We also discuss embeddings of bounded degree trees and other spanning structures in this model, which lead to interesting questions on almost spanning embeddings into G(n, p)

Inference and Mutual Information on Random Factor Graphs

Random factor graphs provide a powerful framework for the study of inference problems such as decoding problems or the stochastic block model. Information-theoretically the key quantity of interest is the mutual information between the observed factor graph and the underlying ground truth around which the factor graph was created; in the stochastic block model, this would be the planted partition. The mutual information gauges whether and how well the ground truth can be inferred from the observable data. For a very general model of random factor graphs we verify a formula for the mutual information predicted by physics techniques. As an application we prove a conjecture about low-density generator matrix codes from [Montanari: IEEE Transactions on Information Theory 2005]. Further applications include phase transitions of the stochastic block model and the mixed k-spin model from physics

Brain Predictability toolbox: a Python library for neuroimaging based machine learning

Summary Brain Predictability toolbox (BPt) represents a unified framework of machine learning (ML) tools designed to work with both tabulated data (in particular brain, psychiatric, behavioral, and physiological variables) and neuroimaging specific derived data (e.g., brain volumes and surfaces). This package is suitable for investigating a wide range of different neuroimaging based ML questions, in particular, those queried from large human datasets. Availability and Implementation BPt has been developed as an open-source Python 3.6+ package hosted at https://github.com/sahahn/BPt under MIT License, with documentation provided at https://bpt.readthedocs.io/en/latest/, and continues to be actively developed. The project can be downloaded through the github link provided. A web GUI interface based on the same code is currently under development and can be set up through docker with instructions at https://github.com/sahahn/BPt_app. Contact Please contact Sage Hahn at [email protected]: 3 Page