Genetic architecture of lodging resistance revealed by genome- wide association study in maize (Zea mays L)

Lodging is one of key factors influencing biomass yield, restricting planting density and reducing mechanical harvesting productivity in maize. Targeted cultivating lodging resistance varieties with screened lines is an eco- nomical and effective approach to improve ability of maize lodging resistance. To accomplish this objective, we performed phenotypic assessment of seven lodging-related traits in a diverse maize population consisting of 290 inbred lines and conducted a genome-wide association study with 201 SSR markers to detected marker-trait as- sociations. Seven lodging-related traits all showed broad phenotypic variations. Through evaluation of stalk push- ing resistance in the field for two years, a number of 32 inbred lines featured with strong lodging resistance were selected out. Correlation analysis indicated that stalk pushing resistance had a significantly positive correlation with third internode diameter and fourth internode diameter and a significantly negative correlation with ear height. Furthermore, a total of 27 and 13 significant associations for lodging-related traits were identified in year 2012 and 2013, respectively. Interestingly, three associations on chromosome 4, 5, and 6 were discovered in both years. Thus, this study provides useful information for understanding genetic architecture of lodging resistance in maize and will benefit maize marker-assistant breeding program with improving lodging resistance

Using computed tomography angiography and computational fluid dynamics to study aortic coarctation in different arch morphologies

ObjectiveTo study the differences in computed tomography angiography (CTA) imaging of gothic arches, crenel arches, and romanesque arches in children with Aortic Coarctation (CoA), and to apply computational fluid dynamics (CFD) to study hemodynamic changes in CoA children with gothic arch aorta.MethodsThe case data and CTA data of children diagnosed with CoA (95 cases) in our hospital were retrospectively collected, and the morphology of the aortic arch in the children was defined as gothic arch (n = 27), crenel arch (n = 25) and romanesque arch (n = 43). The three groups were compared with D1/AOA, D2/AOA, D3/AOA, D4/AOA, D5/AOA, and AAO-DAO angle, TAO-DAO angle, and aortic arch height to width ratio (A/T). Computational fluid dynamics was applied to assess hemodynamic changes in children with gothic arches.ResultsThere were no significant differences between D1/AOA and D2/AOA among gothic arch, crenel arch, and romanesque arch (P > 0.05). The differences in D3/AOA, D4/AOA, and D5/AOA among the three groups were statistically significant (P < 0.05), D4/AOA, D5/AOA of the gothic arch group were smaller than the crenel arch group, and the D3/AOA and D5/AOA of the gothic arch group were smaller than the romanesque arch group (P < 0.05). The difference in AAO-DAO angle among the three groups was statistically significant (P < 0.05), and the AAO-DAO angle of gothic arch was smaller than that of romanesque arch and crenel arch group (P < 0.05). There was no significant difference in the TAO-DAO angle between the three groups (P > 0.05). The difference in A/T values among the three groups was statistically significant (P < 0.05), and the A/T values: gothic arch > romanesque arch > crenel arch (P < 0.05). The CFD calculation of children with gothic arch showed that the pressure drop between the distal stenosis and the descending aorta was 58 mmHg, and the flow rate at the isthmus and descending aorta was high and turbulent.ConclusionGothic aortic arch is common in CoA, it may put adverse effects on the development of the aortic isthmus and descending aorta, and its A/T value and AAO-DAO angle are high. CFD could assess hemodynamic changes in CoA

Evaluate how steaming and sulfur fumigation change the microstructure, physicochemical properties and in vitro digestibility of Gastrodia elata Bl. starch

The sulfur dioxide gas (SO2) generated by sulfur burning can improve the appearance quality of food and enhance the storage time. However, excessive sulfur dioxide will pollute the environment and cause deterioration of food quality, and even the high residual levels can increase the risk of cancer. As Gastrodia elata Blume is prone to corruption during processing, sulfur fumigation is often used for preservation. In this study, spectral analysis and Texture Profile Analysis (TPA) were used to investigate the effects of traditional sulfur fumigation processing on the morphology quality, edible quality and structural characteristics of G. elata. The results showed that compared with direct drying, the pH decreased by 0.399 of the sulfur fumigated after steamed treatment G. elata, and the morphology quality, pasting ability and gel edible quality of the starch were significantly improved. In addition, it was suggested that sulfur fumigation after steaming could promote the release of molecular chains from starch granules and thus enhance the cross-linking between molecules, which explained the reason for the improve of starch edible quality. This study can provide technical and theoretical support for improving the quality of starch rich foods, replacing sulfur fumigation and reducing potential environmental hazards

Two-stage violence detection using ViTPose and classification models at smart airports

This study introduces an innovative violence detection framework tailored to the unique requirements of smart airports, where prompt responses to violent situations are crucial. The proposed framework harnesses the power of ViTPose for human pose estimation and employs a CNN-BiLSTM network to analyse spatial and temporal information within keypoints sequences, enabling the accurate classification of violent behaviour in real-time. Seamlessly integrated within the SAAB’s SAFE (Situational Awareness for Enhanced Security) framework, the solution underwent integrated testing to ensure robust performance in real-world scenarios. The AIRTLab dataset, characterized by its high video quality and relevance to surveillance scenarios, is utilized in this study to enhance the model's accuracy and mitigate false positives. As airports face increased foot traffic in the post-pandemic era, the implementation of AI-driven violence detection systems, such as the one proposed, is paramount for improving security, expediting response times, and promoting data-informed decision-making. The implementation of this framework not only diminishes the probability of violent events but also assists surveillance teams in effectively addressing potential threats, ultimately fostering a more secure and protected aviation sector. Codes are available at: https://github.com/Asami-1/GDP

RING finger 138 deregulation distorts NF-кB signaling and facilities colitis switch to aggressive malignancy

Prolonged activation of nuclear factor (NF)-кB signaling significantly contributes to the development of colorectal cancer (CRC). New therapeutic opportunities are emerging from targeting this distorted cell signaling transduction. Here, we discovered the critical role of RING finger 138 (RNF138) in CRC tumorigenesis through regulating the NF-кB signaling, which is independent of its Ubiquitin-E3 ligase activity involved in DNA damage response. RNF138(−/−) mice were hyper-susceptible to the switch from colitis to aggressive malignancy, which coincided with sustained aberrant NF-кB signaling in the colonic cells. Furthermore, RNF138 suppresses the activation of NF-кB signaling pathway through preventing the translocation of NIK and IKK-Beta Binding Protein (NIBP) to the cytoplasm, which requires the ubiquitin interaction motif (UIM) domain. More importantly, we uncovered a significant correlation between poor prognosis and the downregulation of RNF138 associated with reinforced NF-кB signaling in clinical settings, raising the possibility of RNF138 dysregulation as an indicator for the therapeutic intervention targeting NF-кB signaling. Using the xenograft models built upon either RNF138-dificient CRC cells or the cells derived from the RNF138-dysregulated CRC patients, we demonstrated that the inhibition of NF-кB signaling effectively hampered tumor growth. Overall, our work defined the pathogenic role of aberrant NF-кB signaling due to RNF138 downregulation in the cascade events from the colitis switch to colonic neoplastic transformation and progression, and also highlights the possibility of targeting the NF-кB signaling in treating specific subtypes of CRC indicated by RNF138-ablation

The diploid genome sequence of an Asian individual

Here we present the first diploid genome sequence of an Asian individual. The genome was sequenced to 36-fold average coverage using massively parallel sequencing technology. We aligned the short reads onto the NCBI human reference genome to 99.97% coverage, and guided by the reference genome, we used uniquely mapped reads to assemble a high-quality consensus sequence for 92% of the Asian individual's genome. We identified approximately 3 million single-nucleotide polymorphisms (SNPs) inside this region, of which 13.6% were not in the dbSNP database. Genotyping analysis showed that SNP identification had high accuracy and consistency, indicating the high sequence quality of this assembly. We also carried out heterozygote phasing and haplotype prediction against HapMap CHB and JPT haplotypes (Chinese and Japanese, respectively), sequence comparison with the two available individual genomes (J. D. Watson and J. C. Venter), and structural variation identification. These variations were considered for their potential biological impact. Our sequence data and analyses demonstrate the potential usefulness of next-generation sequencing technologies for personal genomics

Evaluation of Comprehensive Benefits of Land Consolidation Based on AHP and FUZZY

Based on the modern comprehensive evaluation method, in accordance with the scientific, objective and systematic principles, we select four factors (economic, social, ecological and landscape benefits), to establish the evaluation indicator system of comprehensive benefits of rural land consolidation. Then using the theory of fuzzy mathematics (FUZZY) and fuzzy relationship synthesis theory, we establish the fuzzy evaluation model of comprehensive benefits of land consolidation; using analytic hierarchy process (AHP), we determine the weight of each indicator, and conduct fuzzy comprehensive evaluation from various levels. By the weighted average synthesis algorithm, we calculate the evaluation indicators and finally summarize the overall evaluation results for comprehensive evaluation. Taking the case of land consolidation project in Shangyao Town, Datong District, Huainan City in Anhui Province, we calculate the case data based on Matlab software, and the calculation results and evaluation level are consistent with the project acceptance results, verifying the feasibility of this evaluation method