Optimal Elephant Flow Detection

Monitoring the traffic volumes of elephant flows, including the total byte count per flow, is a fundamental capability for online network measurements. We present an asymptotically optimal algorithm for solving this problem in terms of both space and time complexity. This improves on previous approaches, which can only count the number of packets in constant time. We evaluate our work on real packet traces, demonstrating an up to X2.5 speedup compared to the best alternative.Comment: Accepted to IEEE INFOCOM 201

Efficient Summing over Sliding Windows

This paper considers the problem of maintaining statistic aggregates over the last W elements of a data stream. First, the problem of counting the number of 1's in the last W bits of a binary stream is considered. A lower bound of {\Omega}(1/{\epsilon} + log W) memory bits for W{\epsilon}-additive approximations is derived. This is followed by an algorithm whose memory consumption is O(1/{\epsilon} + log W) bits, indicating that the algorithm is optimal and that the bound is tight. Next, the more general problem of maintaining a sum of the last W integers, each in the range of {0,1,...,R}, is addressed. The paper shows that approximating the sum within an additive error of RW{\epsilon} can also be done using {\Theta}(1/{\epsilon} + log W) bits for {\epsilon}={\Omega}(1/W). For {\epsilon}=o(1/W), we present a succinct algorithm which uses B(1 + o(1)) bits, where B={\Theta}(Wlog(1/W{\epsilon})) is the derived lower bound. We show that all lower bounds generalize to randomized algorithms as well. All algorithms process new elements and answer queries in O(1) worst-case time.Comment: A shorter version appears in SWAT 201

Smoothing nodal Calabi-Yau n-folds

Let X be an n-dimensional Calabi-Yau with ordinary double points, where n is odd. Friedman showed that for n=3 the existence of a smoothing of X implies a specific type of relation between homology classes on a resolution of X. (The converse is also true, due to work of Friedman, Kawamata and Tian.) We sketch a more topological proof of this result, and then extend it to higher dimensions. For n>3 the "Yukawa product" on the middle dimensional (co)homology plays an unexpected role. We also discuss a converse, proving it for nodal Calabi-Yau hypersurfaces in projective space.Comment: Included missing torsion in Lemma 2.5. Results unchanged. 20 page

Application of classical molecular dynamics for evaluation of proton transfer mechanism on a protein

AbstractProton transfer reactions on surfaces are prevalent in biology, chemistry and physics. In the present study, we employed classical Molecular Dynamics simulations to search for the presence of transient configurations that enable proton transfer, or proton sharing, between adjacent carboxylate groups on the protein surface. The results demonstrate that, during random fluctuations of the residues on the surface, there are repeated situations in which nearby carboxylates either share a common proton through a hydrogen bond, or are connected by a few water molecules that form conducting networks. These networks do not extend out of the common Coulomb cage of the participating residues and the lifetimes of the bridged structures are sufficiently long to allow passage of a proton between the carboxylates. The detection of domains capable of supporting a rapid proton transfer on a protein supports the notion that clusters of carboxylates are the operative elements of proton collecting antennae, as in bacteriorhodopsin, cytochrome c oxidase or the photosynthetic reaction center

Give Me Some Slack: Efficient Network Measurements

Many networking applications require timely access to recent network measurements, which can be captured using a sliding window model. Maintaining such measurements is a challenging task due to the fast line speed and scarcity of fast memory in routers. In this work, we study the impact of allowing slack in the window size on the asymptotic requirements of sliding window problems. That is, the algorithm can dynamically adjust the window size between W and W(1+tau) where tau is a small positive parameter. We demonstrate this model\u27s attractiveness by showing that it enables efficient algorithms to problems such as Maximum and General-Summing that require Omega(W) bits even for constant factor approximations in the exact sliding window model. Additionally, for problems that admit sub-linear approximation algorithms such as Basic-Summing and Count-Distinct, the slack model enables a further asymptotic improvement. The main focus of the paper is on the widely studied Basic-Summing problem of computing the sum of the last W integers from {0,1 ...,R} in a stream. While it is known that Omega(W log R) bits are needed in the exact window model, we show that approximate windows allow an exponential space reduction for constant tau. Specifically, for tau=Theta(1), we present a space lower bound of Omega(log(RW)) bits. Additionally, we show an Omega(log (W/epsilon)) lower bound for RW epsilon additive approximations and a Omega(log (W/epsilon)+log log R) bits lower bound for (1+epsilon) multiplicative approximations. Our work is the first to study this problem in the exact and additive approximation settings. For all settings, we provide memory optimal algorithms that operate in worst case constant time. This strictly improves on the work of [Mayur Datar et al., 2002] for (1+epsilon)-multiplicative approximation that requires O(epsilon^(-1) log(RW)log log (RW)) space and performs updates in O(log (RW)) worst case time. Finally, we show asymptotic improvements for the Count-Distinct, General-Summing and Maximum problems

Brief Announcement: Give Me Some Slack: Efficient Network Measurements

Many networking applications require timely access to recent network measurements, which can be captured using a sliding window model. Maintaining such measurements is a challenging task due to the fast line speed and scarcity of fast memory in routers. In this work, we study the impact of allowing slack in the window size on the asymptotic requirements of sliding window problems. That is, the algorithm can dynamically adjust the window size between W and W(1+tau) where tau is a small positive parameter. We demonstrate this model\u27s attractiveness by showing that it enables efficient algorithms to problems such as Maximum and General-Summing that require Omega(W) bits even for constant factor approximations in the exact sliding window model. Additionally, for problems that admit sub-linear approximation algorithms such as Basic-Summing and Count-Distinct, the slack model enables a further asymptotic improvement. The main focus of our paper [{Ben Basat} et al., 2017] is on the widely studied Basic-Summing problem of computing the sum of the last W integers from {0,1 ...,R} in a stream. While it is known that Omega(W log{R}) bits are needed in the exact window model, we show that approximate windows allow an exponential space reduction for constant tau. Specifically, for tau=Theta(1), we present a space lower bound of Omega(log(RW)) bits. Additionally, we show an Omega(log ({W/epsilon})) lower bound for RW epsilon additive approximations and a Omega(log ({W/epsilon})+log log{R}) bits lower bound for (1+epsilon) multiplicative approximations. Our work is the first to study this problem in the exact and additive approximation settings. For all settings, we provide memory optimal algorithms that operate in worst case constant time. This strictly improves on the work of [Mayur Datar et al., 2002] for (1+epsilon)-multiplicative approximation that requires O(epsilon^{-1} log ({RW})log log ({RW})) space and performs updates in O(log ({RW})) worst case time. Finally, we show asymptotic improvements for the Count-Distinct, General-Summing and Maximum problems