Suppressing the Rayleigh-Taylor instability with a rotating magnetic field

The Rayleigh-Taylor instability of a magnetic fluid superimposed on a non-magnetic liquid of lower density may be suppressed with the help of a spatially homogeneous magnetic field rotating in the plane of the undisturbed interface. Starting from the complete set of Navier-Stokes equations for both liquids a Floquet analysis is performed which consistently takes into account the viscosities of the fluids. Using experimentally relevant values of the parameters we suggest to use this stabilization mechanism to provide controlled initial conditions for an experimental investigation of the Rayleigh-Taylor instability

Magnetization of polydisperse colloidal ferrofluids: Effect of magnetostriction

We exploit magnetostriction in polydisperse ferrofluids in order to generate nonlinear responses, and apply a thermodynamical method to derive the desired nonlinear magnetic susceptibility. For an ideal gas, this method has been demonstrated to be in excellent agreement with a statistical method. In the presence of a sinusoidal ac magnetic field, the magnetization of the polydisperse ferrofluid contains higher-order harmonics, which can be extracted analytically by using a perturbation approach. We find that the harmonics are sensitive to the particle distribution and the degree of field-induced anisotropy of the system. In addition, we find that the magnetization is higher in the polydisperse system than in the monodisperse one, as also found by a recent Monte Carlo simulation. Thus, it seems possible to detect the size distribution in a polydisperse ferrofluid by measuring the harmonics of the magnetization under the influence of magnetostriction.Comment: 23 pages, 4 figures. To be accepted for publication in Phys. Rev.

Invalidation of the Kelvin Force in Ferrofluids

Direct and unambiguous experimental evidence for the magnetic force density being of the form $M\nabla B$ in a certain geometry - rather than being the Kelvin force $M\nabla H$ - is provided for the first time. (M is the magnetization, H the field, and B the flux density.)Comment: 4 pages, 4 figure

A ferrofluid based neural network: design of an analogue associative memory

We analyse an associative memory based on a ferrofluid, consisting of a system of magnetic nano-particles suspended in a carrier fluid of variable viscosity subject to patterns of magnetic fields from an array of input and output magnetic pads. The association relies on forming patterns in the ferrofluid during a trainingdphase, in which the magnetic dipoles are free to move and rotate to minimize the total energy of the system. Once equilibrated in energy for a given input-output magnetic field pattern-pair the particles are fully or partially immobilized by cooling the carrier liquid. Thus produced particle distributions control the memory states, which are read out magnetically using spin-valve sensors incorporated in the output pads. The actual memory consists of spin distributions that is dynamic in nature, realized only in response to the input patterns that the system has been trained for. Two training algorithms for storing multiple patterns are investigated. Using Monte Carlo simulations of the physical system we demonstrate that the device is capable of storing and recalling two sets of images, each with an accuracy approaching 100%.Comment: submitted to Neural Network

Hydrodynamic interactions in colloidal ferrofluids: A lattice Boltzmann study

We use lattice Boltzmann simulations, in conjunction with Ewald summation methods, to investigate the role of hydrodynamic interactions in colloidal suspensions of dipolar particles, such as ferrofluids. Our work addresses volume fractions $\phi$ of up to 0.20 and dimensionless dipolar interaction parameters $\lambda$ of up to 8. We compare quantitatively with Brownian dynamics simulations, in which many-body hydrodynamic interactions are absent. Monte Carlo data are also used to check the accuracy of static properties measured with the lattice Boltzmann technique. At equilibrium, hydrodynamic interactions slow down both the long-time and the short-time decays of the intermediate scattering function $S(q,t)$, for wavevectors close to the peak of the static structure factor $S(q)$, by a factor of roughly two. The long-time slowing is diminished at high interaction strengths whereas the short-time slowing (quantified via the hydrodynamic factor $H(q)$) is less affected by the dipolar interactions, despite their strong effect on the pair distribution function arising from cluster formation. Cluster formation is also studied in transient data following a quench from $\lambda = 0$; hydrodynamic interactions slow the formation rate, again by a factor of roughly two

Magnetism, FeS colloids, and Origins of Life

A number of features of living systems: reversible interactions and weak bonds underlying motor-dynamics; gel-sol transitions; cellular connected fractal organization; asymmetry in interactions and organization; quantum coherent phenomena; to name some, can have a natural accounting via $physical$ interactions, which we therefore seek to incorporate by expanding the horizons of `chemistry-only' approaches to the origins of life. It is suggested that the magnetic 'face' of the minerals from the inorganic world, recognized to have played a pivotal role in initiating Life, may throw light on some of these issues. A magnetic environment in the form of rocks in the Hadean Ocean could have enabled the accretion and therefore an ordered confinement of super-paramagnetic colloids within a structured phase. A moderate H-field can help magnetic nano-particles to not only overcome thermal fluctuations but also harness them. Such controlled dynamics brings in the possibility of accessing quantum effects, which together with frustrations in magnetic ordering and hysteresis (a natural mechanism for a primitive memory) could throw light on the birth of biological information which, as Abel argues, requires a combination of order and complexity. This scenario gains strength from observations of scale-free framboidal forms of the greigite mineral, with a magnetic basis of assembly. And greigite's metabolic potential plays a key role in the mound scenario of Russell and coworkers-an expansion of which is suggested for including magnetism.Comment: 42 pages, 5 figures, to be published in A.R. Memorial volume, Ed Krishnaswami Alladi, Springer 201

CRISPR-Cas9 ribonucleoprotein-mediated co-editing and counterselection in the rice blast fungus

The rice blast fungus Magnaporthe oryzae is the most serious pathogen of cultivated rice and a significant threat to global food security. To accelerate targeted mutation and specific genome editing in this species, we have developed a rapid plasmid-free CRISPR-Cas9-based genome editing method. We show that stable expression of Cas9 is highly toxic to M. oryzae. However efficient gene editing can be achieved by transient introduction of purified Cas9 pre-complexed to RNA guides to form ribonucleoproteins (RNPs). When used in combination with oligonucleotide or PCR-generated donor DNAs, generation of strains with specific base pair edits, in-locus gene replacements, or multiple gene edits, is very rapid and straightforward. We demonstrate a co-editing strategy for the creation of single nucleotide changes at specific loci. Additionally, we report a novel counterselection strategy which allows creation of precisely edited fungal strains that contain no foreign DNA and are completely isogenic to the wild type. Together, these developments represent a scalable improvement in the precision and speed of genetic manipulation in M. oryzae and are likely to be broadly applicable to other fungal species

Magnetization of magnetoactive elastomers under the assumption of breakable adhesion at the particle/matrix interface

In this work we study the magnetization of magnetoactive elastomers (MAE) in which the interface between the matrix and magnetic particles is unstable and allows for slipping of the particles against the wall of their elastomer cavities. The estimate of the maximal angle at which each particle can decline its axis from the initial position is made based on cyclic measurement of several consecutive hysteresis loops at different maximal magnetic fields. A model of magnetization of magnetically hard multigrain particles in an elastic environment with allowance for their possible slipping is proposed. Results of modelling is in fair agreement with the experimental data obtained on MAEs whose polymeric matrix is made of polydimethylsiloxane and the magnetic filler is NdFeB spherical particles. © 2022 The Royal Society of ChemistryDeutsche Forschungsgemeinschaft, DFG: Bo 3343/3-1, Od 18/24-1; Russian Foundation for Basic Research, РФФИ: 19-52-12045The research was accomplished with the financial support by RFBR project 19-52-12045 and DFG projects Bo 3343/3-1 and Od 18/24-1

Theoretical study of the magnetization dynamics of non-dilute ferrofluids

The paper is devoted to the theoretical investigation of the magnetodipolar interparticle interaction effect on remagnetization dynamics in moderately concentrated ferrofluids. We consider a homogeneous (without particle aggregates) ferrofluid consisting of identical spherical particles and employ a rigid dipole model, where magnetic moment of a particle is fixed with respect to the particle itself. In particular, for the magnetization relaxation after the external field is instantly switched off, we show that the magnetodipolar interaction leads to the increase of the initial magnetization relaxation time. For the complex ac-susceptibility we find that the this interaction leads to an overall increase of the imaginary susceptibility part and shifts the peak on its frequency dependence towards lower frequencies. Comparing results obtained with our analytical approach (second order virial expansion) to numerical simulation data (Langevin dynamics method), we demonstrate that the employed virial expansion approximation gives a good qualitative description of the ferrofluid magnetization dynamics and provides a satisfactory quantitative agreement with numerical simulations for the dc magnetization relaxation - up to the particle volume fraction c ~ 10% and for the ac-susceptibility - up to c ~ 5 %.Comment: 12 pages, 6 figures, submitted to PR

Transcriptome profiling of the rice blast fungus during invasive plant infection and in vitro stresses

<p>Abstract</p> <p>Background</p> <p>Rice blast is the most threatening disease to cultivated rice. <it>Magnaporthe oryzae</it>, its causal agent, is likely to encounter environmental challenges during invasive growth in its host plants that require shifts in gene expression to establish a compatible interaction. Here, we tested the hypothesis that gene expression patterns during <it>in planta </it>invasive growth are similar to <it>in vitro </it>stress conditions, such as nutrient limitation, temperature up shift and oxidative stress, and determined which condition most closely mimicked that of <it>in planta </it>invasive growth. Gene expression data were collected from these <it>in vitro </it>experiments and compared to fungal gene expression during the invasive growth phase at 72 hours post-inoculation in compatible interactions on two grass hosts, rice and barley.</p> <p>Results</p> <p>We identified 4,973 genes that were differentially expressed in at least one of the <it>in planta </it>and <it>in vitro </it>stress conditions when compared to fungal mycelia grown in complete medium, which was used as reference. From those genes, 1,909 showed similar expression patterns between at least one of the <it>in vitro </it>stresses and rice and/or barley. Hierarchical clustering of these 1,909 genes showed three major clusters in which <it>in planta </it>conditions closely grouped with the nutrient starvation conditions. Out of these 1,909 genes, 55 genes and 129 genes were induced and repressed in all treatments, respectively. Functional categorization of the 55 induced genes revealed that most were either related to carbon metabolism, membrane proteins, or were involved in oxidoreduction reactions. The 129 repressed genes showed putative roles in vesicle trafficking, signal transduction, nitrogen metabolism, or molecular transport.</p> <p>Conclusions</p> <p>These findings suggest that <it>M. oryzae </it>is likely primarily coping with nutrient-limited environments at the invasive growth stage 72 hours post-inoculation, and not with oxidative or temperature stresses.</p