The taste of diatoms: the role of diatom growth phase characteristics and associated bacteria for benthic copepod grazing

The interactions between primary producers and their consumers are of particular interest for the overall functioning of marine ecosystems. The biochemical composition of the organisms involved affects the efficiency of energy transfer in marine food webs. In addition to top-down control by grazers, bottom-up control of these interactions by primary producers and associated bacteria has recently received more attention. Planktonic copepods selectively feed on older diatom cells, a behaviour regulated by changes in exometabolites around diatoms. To test whether this also applies to benthic copepods, Seminavis robusta cells in lag, exponential and stationary growth phases were biochemically screened, and the diversity of associated bacteria was assessed. The diatoms were subsequently 13C prelabelled and offered to the harpacticoid copepod Microarthridion littorale in a grazing experiment. Harpacticoid copepods incorporated more carbon from younger diatom cells in the lag growth phase, which might be based on (1) biochemical differences of diatom cells in different growth phases and (2) the bacteria associated with the diatoms. The younger diatom cells were characterised by a higher C:N ratio and more extracellular polymer secretions but a lower fatty acid content. The bacterial community on these cells differed from those on cells in the later growth phases. Our results thus suggest that the feeding strategies of benthic harpacticoid copepods differ from those of calanoid copepods. This outcome can be explained by the tight contact between benthic copepods and the typical carbon and bacteria-rich biofilm on sediments

Physiological and transcriptomic evidence for a close coupling between chloroplast ontogeny and cell cycle progression in the pennate diatom <i>Seminavis robusta</i>

Despite the growing interest in diatom genomics, detailed time series of gene expression in relation to key cellular processes are still lacking. Here, we investigated the relationships between the cell cycle and chloroplast development in the pennate diatom Seminavis robusta. This diatom possesses two chloroplasts with a well-orchestrated developmental cycle, common to many pennate diatoms. By assessing the effects of induced cell cycle arrest with microscopy and flow cytometry, we found that division and reorganization of the chloroplasts are initiated only after S-phase progression. Next, we quantified the expression of the S. robusta FtsZ homolog to address the division status of chloroplasts during synchronized growth and monitored microscopically their dynamics in relation to nuclear division and silicon deposition. We show that chloroplasts divide and relocate during the S/G2 phase, after which a girdle band is deposited to accommodate cell growth. Synchronized cultures of two genotypes were subsequently used for a cDNA-amplified fragment length polymorphism-based genome-wide transcript profiling, in which 917 reproducibly modulated transcripts were identified. We observed that genes involved in pigment biosynthesis and coding for light-harvesting proteins were up-regulated during G2/M phase and cell separation. Light and cell cycle progression were both found to affect fucoxanthin-chlorophyll a/c-binding protein expression and accumulation of fucoxanthin cell content. Because chloroplasts elongate at the stage of cytokinesis, cell cycle-modulated photosynthetic gene expression and synthesis of pigments in concert with cell division might balance chloroplast growth, which confirms that chloroplast biogenesis in S. robusta is tightly regulated

Phylogeography of the Microcoleus vaginatus (Cyanobacteria) from Three Continents – A Spatial and Temporal Characterization

It has long been assumed that cyanobacteria have, as with other free-living microorganisms, a ubiquitous occurrence. Neither the geographical dispersal barriers nor allopatric speciation has been taken into account. We endeavoured to examine the spatial and temporal patterns of global distribution within populations of the cyanobacterium Microcoleus vaginatus, originated from three continents, and to evaluate the role of dispersal barriers in the evolution of free-living cyanobacteria. Complex phylogeographical approach was applied to assess the dispersal and evolutionary patterns in the cyanobacterium Microcoleus vaginatus (Oscillatoriales). We compared the 16S rRNA and 16S-23S ITS sequences of strains which had originated from three continents (North America, Europe, and Asia). The spatial distribution was investigated using a phylogenetic tree, network, as well as principal coordinate analysis (PCoA). A temporal characterization was inferred using molecular clocks, calibrated from fossil DNA. Data analysis revealed broad genetic diversity within M. vaginatus. Based on the phylogenetic tree, network, and PCoA analysis, the strains isolated in Europe were spatially separated from those which originated from Asia and North America. A chronogram showed a temporal limitation of dispersal barriers on the continental scale. Dispersal barriers and allopatric speciation had an important role in the evolution of M. vaginatus. However, these dispersal barriers did not have a permanent character; therefore, the genetic flow among populations on a continental scale was only temporarily present. Furthermore, M. vaginatus is a recently evolved species, which has been going through substantial evolutionary changes

Lack of Phylogeographic Structure in the Freshwater Cyanobacterium Microcystis aeruginosa Suggests Global Dispersal

Background : Free-living microorganisms have long been assumed to have ubiquitous distributions with little biogeographic signature because they typically exhibit high dispersal potential and large population sizes. However, molecular data provide contrasting results and it is far from clear to what extent dispersal limitation determines geographic structuring of microbial populations. We aimed to determine biogeographical patterns of the bloom-forming freshwater cyanobacterium Microcystis aeruginosa. Being widely distributed on a global scale but patchily on a regional scale, this prokaryote is an ideal model organism to study microbial dispersal and biogeography. Methodology/Principal Findings : The phylogeography of M. aeruginosa was studied based on a dataset of 311 rDNA internal transcribed spacer (ITS) sequences sampled from six continents. Richness of ITS sequences was high (239 ITS types were detected). Genetic divergence among ITS types averaged 4% (maximum pairwise divergence was 13%). Preliminary analyses revealed nearly completely unresolved phylogenetic relationships and a lack of genetic structure among all sequences due to extensive homoplasy at multiple hypervariable sites. After correcting for this, still no clear phylogeographic structure was detected, and no pattern of isolation by distance was found on a global scale. Concomitantly, genetic differentiation among continents was marginal, whereas variation within continents was high and was mostly shared with all other continents. Similarly, no genetic structure across climate zones was detected. Conclusions/Significance : The high overall diversity and wide global distribution of common ITS types in combination with the lack of phylogeographic structure suggest that intercontinental dispersal of M. aeruginosa ITS types is not rare, and that this species might have a truly cosmopolitan distribution

Tolerance of benthic diatoms from temperate aquatic and terrestrial habitats to experimental desiccation and temperature stress

Soils differ from aquatic sediments in environmental characteristics such as moisture availability and temperature fluctuations, and it is therefore believed that soil-inhabiting diatoms have a broader tolerance range to these stresses than aquatic diatoms. To test this hypothesis, we assessed the survival capacities of vegetative cells of 34 benthic diatom species from terrestrial and aquatic habitats in Belgium when exposed to desiccation and temperature stress. Six different stress conditions were studied: gradual heating up to +30°C and +40°C, abrupt heating to +40°C, freezing. to -20°C and desiccation with and without preconditioning at +30°C. All six conditions resulted in a significantly decreased survival of cells compared to control conditions. Desiccation killed all tested strains, freezing was survived by only three species and abrupt heating was significantly more lethal than gradual heating, suggesting a generally high sensitivity of vegetative diatom cells to these three stress factors. While tolerance to temperature extremes (+40°C and -20°C) was to a large extent species-specific, habitat-specific differences in cell survival were also detected. Only terrestrial species survived freezing, and aquatic diatoms were less tolerant to gradual heating to +40°C, both pointing at a higher tolerance of terrestrial diatoms to temperature extremes. Moreover, in two species with both aquatic and terrestrial isolates, only the terrestrial strains survived +40°C. We conclude that vegetative cells of benthic diatoms (1) are very sensitive to desiccation, freezing and abrupt heating and (2) have a habitat-dependent tolerance to temperature extremes. The consequences of these observations for the dispersal capacities and the subsequent biogeographical patterns of diatoms are discussed

DNA-based species delimitation in algae

Given the problems of species delimitation in algae using morphology or sexual compatibility, molecular data are becoming the standard for delimiting species and testing their traditional boundaries. The idea that species are separately evolving metapopulation lineages, along with theoretical progress in phylogenetic and population genetic analyses, has led to the development of new methods of species delimitation. We review these recent developments in DNA-based species delimitation methods, and discuss how they have changed and continue to change our understanding of algal species boundaries. Although single-locus approaches have proven effective for a first rapid and large-scale assessment of species diversity, species delimitation based on single gene trees falls short due to gene tree-species tree incongruence, caused by confounding processes like incomplete lineage sorting, trans-species polymorphism, hybridization and introgression. Data from unlinked loci and multi-species coalescent methods, which combine principles from phylogenetics and population genetics, may now be able to account for these complicating factors. Several of these methods also provide statistical support regarding species boundaries, which is important because speciation is a process and therefore uncertainty about precise species boundaries is inevitable in recently diverged lineages

Phenological shifts alter the seasonal structure of pollinator assemblages in Europe

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