Proposed research for innovative solutions for chickpeas and beans in a climate change scenario: The Mediterranean basin

In order to gain insight into the complex molecular networks driving legume adaptation caused by climate change, it is necessary to deeply characterize the existing germplasm in response to the environmental constraint predicted to worsen in the near future: drought. In this study, we propose to perform a three-year deep agronomic characterization of local genotypes of selected legumes in abiotic stressing conditions through controlled and field experiments conducted in several countries of the Mediterranean basin (Italy, Spain, Algeria, Tunisia, Turkey, Lebanon, and Croatia). These phenotypic analyses will be integrated with a multi-omic approach aiming at identifying the key players involved in the modulation of the analyzed traits that includes the analysis of the plant methylome, transcriptome, and proteome. Following this approach, we propose to deliver epigenomic markers linked with rapid adaptation mechanisms in response to drought. Besides, new genetic variability by breeding could be created in stressing conditions and produce the basis for the obtainment of more productive cultivars in worsening environments. The epigenetic marks identified in "omic" activities will be validated in molecular marker-assisted selection in F2-F4 populations. Finally, specific rhizobia strains for the best evaluated genotypes will be identified in order to enhance symbiotic nitrogen fixation in drought stress conditions with selected cultivars

Next-generation methods for early disease detection in crops

: Plant pathogens are commonly identified in the field by the typical disease symptoms that they can cause. The efficient early detection and identification of pathogens are essential procedures to adopt effective management practices that reduce or prevent their spread in order to mitigate the negative impacts of the disease. In this review, the traditional and innovative methods for early detection of the plant pathogens highlighting their major advantages and limitations are presented and discussed. Traditional techniques of diagnosis used for plant pathogen identification are focused typically on the DNA, RNA (when molecular methods), and proteins or peptides (when serological methods) of the pathogens. Serological methods based on mainly enzyme-linked immunosorbent assay (ELISA) are the most common method used for pathogen detection due to their high-throughput potential and low cost. This technique is not particularly reliable and sufficiently sensitive for many pathogens detection during the asymptomatic stage of infection. For non-cultivable pathogens in the laboratory, nucleic acid-based technology is the best choice for consistent pathogen detection or identification. Lateral flow systems are innovative tools that allow fast and accurate results even in field conditions, but they have sensitivity issues to be overcome. PCR assays performed on last-generation portable thermocyclers may provide rapid detection results in situ. The advent of portable instruments can speed pathogen detection, reduce commercial costs, and potentially revolutionize plant pathology. This review provides information on current methodologies and procedures for the effective detection of different plant pathogens. © 2023 The Authors. Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry

Development of a Real-Time Loop-Mediated Isothermal Amplification Assay for the Rapid Detection of Olea Europaea Geminivirus

A real-time loop-mediated isothermal amplification (LAMP) assay was developed for simple, rapid and efficient detection of the Olea europaea geminivirus (OEGV), a virus recently reported in different olive cultivation areas worldwide. A preliminary screening by end-point PCR for OEGV detection was conducted to ascertain the presence of OEGV in Sicily. A set of six real-time LAMP primers, targeting a 209-nucleotide sequence elapsing the region encoding the coat protein (AV1) gene of OEGV, was designed for specific OEGV detection. The specificity, sensitivity, and accuracy of the diagnostic assay were determined. The LAMP assay showed no cross-reactivity with other geminiviruses and was allowed to detect OEGV with a 10-fold higher sensitivity than conventional end-point PCR. To enhance the potential of the LAMP assay for field diagnosis, a simplified sample preparation procedure was set up and used to monitor OEGV spread in different olive cultivars in Sicily. As a result of this survey, we observed that 30 out of 70 cultivars analyzed were positive to OEGV, demonstrating a relatively high OEGV incidence. The real-time LAMP assay developed in this study is suitable for phytopathological laboratories with limited facilities and resources, as well as for direct OEGV detection in the field, representing a reliable method for rapid screening of olive plant material

PE0306 Haplotype-Resolved Genome Assemblies and a Pan-Genome of Six Pistachio Cultivars

Trabajo presentado en la International Plant and Animal Genome Conference, celebrada en San Diego, CA (Estados Unidos), del 13 al 18 de enero de 2023Pistachio (Pistacia vera L., 2n =2x = 30) is one of the most economically important long-lived crops, including cashew and mango in the family Anacardiaceae. Although dioecious pistachio trees are xerophytic and highly resilient to abiotic stresses, they require a certain amount of winter rest period to exit bud dormancy and to flower synchronically between male and female trees. The `Kerman¿ (P. vera cv. Kerman) and `Peter¿ (P. vera cv. Peter) have been the dominant pair of female and male cultivars traditionally grown in California for more than 50 years, whereas the understanding of genomic diversity and approaches for pistachio breeding is limited without the reference-quality genome. Genetic diversity, such as structural and gene content variation, is a major source for crop improvement and breeding, which cannot be captured from a single reference genome. In the present study, we report haplotype-resolved chromosome-level reference genomes of six genetically diverse collections of pistachio (`Kerman¿, `Mateur¿, `Sirora¿, Napoletana¿, `Chaparrillo¿, and `T41¿). The diploid assemblies ranged from 568.55 to 608.21 Mb in size with contig N50 of 28 - 37 Mb. More than 98% of conserved orthologs (BUSCO) were represented for all genome assemblies. The dynamics of transposable elements (TEs) were characterized in the genomes where the TEs accounted for about 65 - 68% of the genomes. The gene annotation analyses using Iso-seq data generated from different five tissue types predicted about 38,000 protein-coding genes. Two haplotypes of each genome showed substantial sequence variation, suggesting high heterozygosity in pistachio genomes. Pan-genome construction and analyses characterized remarkable presence-absence gene content variation between cultivars. The reference genomes with fully annotated genes and pan-genome construction serve as rich resources for genomic breeding and improvement and comparative genomics of pistachio

Dai balconi ai parchi urbani: buone pratiche per un giardinaggio consapevole

Prodotto nell’ambito del progetto LIFE15 GIE/IT/001039 “Alien Species Awareness Program”(ASAP), è un opuscolo di tipo tecnico-pratico che intende fornire alcune informazioni di base sulle piante esotiche invasive presenti in Italia nonché, seguendo le buone pratiche dettate nel Codice di condotta definito nell’ambito della Convenzione di Berna, proporre un numero non esaustivo di specie native da utilizzare in alternativa alle piante esotiche invasive inserite nella Lista di Rilevanza Unionale e per le quali vi è divieto di importazione, commercio, possesso, riproduzione, trasporto, utilizzo e rilascio in natura. E’ indirizzato a tutti coloro che sono coinvolti direttamente o indirettamente nella produzione, commercializzazione e impiego delle piante ornamentali: aziende florovivaistiche importatori di piante e tutti coloro che svolgono un ruolo nella progettazione e realizzazione di aree verdi quali gli Architetti paesaggisti, i Dottori Forestali, i Dottori Agronomi e a tutti gli appassionati di giardinaggio. La scelta di utilizzare specie autoctone nel verde urbano risponde anche all’esigenza di garantire una migliore tutela e conservazione della biodiversità negli spazi urbani

An efficient protocol for Cistus crispus L. (Cistaceae) micropropagation

Cistus crispus (Cistaceae) is a species adapted to arid and semi-arid conditions, and it has ornamental and medicinal uses. In Italy, native populations of C. crispus are threatened by the collection due to the low number of individuals in the populations, anthropogenic pressure, and the changing environmental condition that enhance other more aggressive and hybridisable Cistus species. Here, we set up the variables for its micropropagation protocols to achieve a high number of plants per unit time. Various steps of the micropropagation protocol were modulated, including various sodium hypochlorite concentrations (CHCs) and time of sterilisation. The efficiency of the protocol maximised at 25 min sterilisation with 2.5% CHC and decreasing explant vitality at increasing time and CHC. Both shoot proliferation and root emissions were maximised at 1.78 μM N-6-benzyladenine (BA) in the growing medium, with up to 5.4 explants per cycle, with 5.8 roots per explant, and 84 healthy explants. Kinetin stimulated further the axillary root proliferation more than dimethylallylamino purine or BA. Lastly, the application of indole acetic acid increased root emissions during the acclimation stage more than the application of indole butyric acid, and this occurred irrespective of their concentrations, up to 2.0 μg · g−1. These results can foster the use of C. crispus as an ornamental species, for xeriscaping or for the extraction of its secondary compounds, which have various industrial uses. These results can also have an indirect implication for the conservation of the species by reducing the collection for ornamental purposes from its natural population

An efficient protocol for Cistus crispus L. (Cistaceae) micropropagation

Cistus crispus (Cistaceae) is a species adapted to arid and semi-arid conditions, and it has ornamental and medicinal uses. In Italy, native populations of C. crispus are threatened by the collection due to the low number of individuals in the populations, anthropogenic pressure, and the changing environmental condition that enhance other more aggressive and hybridisable Cistus species. Here, we set up the variables for its micropropagation protocols to achieve a high number of plants per unit time. Various steps of the micropropagation protocol were modulated, including various sodium hypochlorite concentrations (CHCs) and time of sterilisation. The efficiency of the protocol maximised at 25 min sterilisation with 2.5% CHC and decreasing explant vitality at increasing time and CHC. Both shoot proliferation and root emissions were maximised at 1.78 μM N-6-benzyladenine (BA) in the growing medium, with up to 5.4 explants per cycle, with 5.8 roots per explant, and 84 healthy explants. Kinetin stimulated further the axillary root proliferation more than dimethylallylamino purine or BA. Lastly, the application of indole acetic acid increased root emissions during the acclimation stage more than the application of indole butyric acid, and this occurred irrespective of their concentrations, up to 2.0 μg · g−1. These results can foster the use of C. crispus as an ornamental species, for xeriscaping or for the extraction of its secondary compounds, which have various industrial uses. These results can also have an indirect implication for the conservation of the species by reducing the collection for ornamental purposes from its natural population

An integrated approach to the study of Hypericum occurring in Sicily

An integrated approach to the study of taxa of the genus Hypericum occurring in Sicily is proposed. The results of morphological, biochemical, and molecular analyses are combined to better assess the relationships between the species investigated and test the suitability of DNA barcoding technique in the discrimination of these taxa. For the name Hypericum aegypticum subsp. webbii (Spach) N. Robson a lectotype is designated. For Hypericum triquetrifolium Turra a lectotype and a supporting epitype are designated. The presence of Hypericum perforatum L. subsp. perforatum is excluded from Sicily and the previous reports have to be referred to H. perforatum subsp. veronense (Schrank) Ces. Hypericum perfoliatum L. and H. pubescens Boiss. are close morphologically and chemically, as well as based on the results from rcbL marker, although belonging to different sections. Biochemical analyses confirmed the relevant amounts in bioactive metabolites of the studied taxa. Hypericum perfoliatum L. is proposed as a valid alternative to H. perforatum L. for cultivation with phytotherapic purposes

Safety optimized shift-scheduling system based on wireless vibration monitoring for mechanical harvesting operations

Traditional approaches to vibration risk assessment are often carried out manually on the basis of reference data, whereas an automated approach, can yield more valuable information that can be beneficial for improving the health and safety conditions of the workers. In particular, the exposure to prolonged vibration is a potential cause of pathologies such as the hand-arm vibration syndrome (HAVS), therefore national and international regulations establish recommended limits to the workers' exposure to vibration within an allowable daily limit. However, evaluating the maximum allowable operating time is not straightforward, therefore reference vibration values are provided by the manufacturer. These values are frequently unreliable, since the effective vibration intensity generated by mechanical machines largely depends upon several specific factors such as maintenance, operating conditions, etc. A more effective approach would rather involve equipping the worker with suitable instruments to monitor and analyse in real time the vibration exposure. This is particularly difficult in open-field operations as mechanical harvesting, where wireless sensing and communicating technologies can be effectively employed in general framework of the Internet of Things (IoT) to develop small monitoring devices at affordable cost. In such context, the present research proposes an innovative system aimed at estimating the hand-arm exposure to vibration according to the Standard EN ISO 5349-1:2004. In particular, the proposed system is based on a referenced monitoring system, based on the employment of a compact wearable unit to be attached to the waist of the operator and a fixed station for data storage and analysis. The paper describes how this information can be exploited in a decision context to effectively schedule the working shifts for a team of workers in high exposure operations such as olive harvesting with mechanical shakers

Morphological and genetic variation of Chamaerops humilis (Arecaceae) in relation to the altitude

The Mediterranean dwarf palm (Chamaerops humilis L.) is native to Western and Central Mediterranean. Since classical times this species has been cultivated and several varieties have been described on material of unknown origins. In this study, plants grown from seeds collected in the wild from seven populations spread along the Mediterranean basin were cultivated under the same environmental conditions, investigated morphologically and genetically by screening the polymorphism of ten SSR loci. Two groups are clearly separated, the populations growing at low altitudes and those living above a thousand meters of altitude. Due to morphological, geographic and environmental isolation, here it is proposed to discriminate the populations growing at high altitude on the Moroccan High Atlas and Anti-Atlas as a distinct subspecies