Performs_ABBA_BABA_on_populations

Perl script to calculate fDM and D statistics (two types of ABBABABA statistics) from a tab delimited input file. Command line format is in comments in the script

Documentation of sediment core K7905-100GC

HiSeqX aDNA vcf, repeats removed, chr

iqtree_chrX

RADseq xDNA phylogen

GenotypeVCFs_noBSQR_filtered_aDNA_only.vcf

RADseq aDNA vc

iqtree_ml

RADseq aDNA phylogen

GenotypeVCFs_noBSQR_filtered_aDNA_only.vcf.gz.tab_with_baboon_and_human

Autosomal RADseq alignment with human, baboon,and rhesus outgroup

nonrecal_filtered_chr6_final.vcf.gz_norepeat.vcf

HiSeqX aDNA vcf, repeats removed, chr

FigTree_xDNA_gapped_and_ungapped_data_included

RADseq xDNA chronogra

FigTree_mcmctree_independent_rates

RADseq aDNA chronogra

nonrecal_filtered_chr11_final.vcf.gz_norepeat.vcf

HiSeqX aDNA vcf, repeats removed, chr1