Impacts of Road Dust on Small Subarctic Lake Systems

Arctic regions have been experiencing increasing pressures from multiple environmental stressors, most notably rapid climate change and human development. Previous research has demonstrated the impacts of calcareous dust from gravel roads on surrounding vegetation and permafrost, whereas aquatic systems have remained largely unstudied. Here, we explore whether 1) the chronic generation of dust from the 740 km long Dempster Highway has affected water chemistry and diatom assemblages in lakes in the Peel Plateau region of the Northwest Territories, and 2) accelerated regional warming has affected these lakes. A suite of 27 water chemistry variables was assessed from 28 lakes along a 40 m – 26 km distance from the highway. Paleolimnological analyses of biological proxies (diatoms, visible reflectance spectroscopy-derived chlorophyll-a, and an index of chrysophyte scales to diatoms [S:D]) were undertaken on dated sediment cores from two lakes near the highway and one lake situated far from the highway, outside the expected range of dust transport. Conductivity and calcium exhibited a wide range of measurements across our 28 sites; lakes within 1 km of the highway generally exhibited higher ions and related variables than more distant lakes. Analyses of diatom assemblages indicated that the two shallower sites near the highway underwent modest compositional changes over the past approximately 100 years, whereas changes recorded at the farther site were more pronounced. The diatom records, supported by chlorophyll-a and S:D indices, indicated that changes in both the near and far lakes were consistent with warming, with little discernable impact from road dust. Whilst chemical changes associated with the half-century old highway corridor appear clear, they are not yet of sufficient magnitude to elicit a directional biological response in algal assemblages

AUTOPSY STUDY OF TESTICLES IN COVID-19: UPREGULATION OF IMMUNE-RELATED GENES AND DOWNREGULATION OF TESTIS-SPECIFIC GENES

Context Infection by SARS-CoV-2 may be associated with testicular dysfunction that could affect male fertility. Objective Testicles of fatal COVID-19 cases were investigated to detect virus in tissue and to evaluate histopathological and transcriptomic changes. Methods Three groups were compared: (a) uninfected controls (subjects dying of trauma or sudden cardiac death; n = 10); (b) subjects dying of COVID-19 (virus-negative in testes; n = 15); (c) subjects dying of COVID-19 (virus-positive in testes; n = 9). SARS-CoV-2 genome and nucleocapsid antigen were probed using RT-PCR, in situ hybridization, and immunohistochemistry (IHC). Infiltrating leukocytes were typed by IHC. mRNA transcripts of immune-related and testis-specific genes were quantified using the nCounter method. Results SARS-CoV-2 was detected in testis tissue of 9/24 (37%) COVID-19 cases accompanied by scattered T-cell and macrophage infiltrates. Size of testicles and counts of spermatogenic cells were not significantly different among groups. Analysis of mRNA transcripts showed that in virus-positive testes immune processes were activated (interferon-alpha and -gamma pathways). By contrast, transcription of 12 testis-specific genes was downregulated, independently of virus positivity in tissue. By IHC, expression of the luteinizing hormone/choriogonadotropin receptor was enhanced in virus-positive compared to virus-negative testicles, while expression of receptors for androgens and the follicle-stimulating hormone were not significantly different among groups. Conclusion In lethal COVID-19 cases, infection of testicular cells is not uncommon. Viral infection associates with activation of interferon pathways and downregulation of testis-specific genes involved in spermatogenesis. Due to the exceedingly high numbers of infected people in the pandemic, the impact of virus on fertility should be further investigated

Impacts of Road Dust on Small Subarctic Lake Systems

Arctic regions have been experiencing increasing pressures from multiple environmental stressors, most notably rapid climate change and human development. Previous research has demonstrated the impacts of calcareous dust from gravel roads on surrounding vegetation and permafrost, whereas aquatic systems have remained largely unstudied. Here, we explore whether 1) the chronic generation of dust from the 740 km long Dempster Highway has affected water chemistry and diatom assemblages in lakes in the Peel Plateau region of the Northwest Territories, and 2) accelerated regional warming has affected these lakes. A suite of 27 water chemistry variables was assessed from 28 lakes along a 40 m – 26 km distance from the highway. Paleolimnological analyses of biological proxies (diatoms, visible reflectance spectroscopy-derived chlorophyll-a, and an index of chrysophyte scales to diatoms [S:D]) were undertaken on dated sediment cores from two lakes near the highway and one lake situated far from the highway, outside the expected range of dust transport. Conductivity and calcium exhibited a wide range of measurements across our 28 sites; lakes within 1 km of the highway generally exhibited higher ions and related variables than more distant lakes. Analyses of diatom assemblages indicated that the two shallower sites near the highway underwent modest compositional changes over the past approximately 100 years, whereas changes recorded at the farther site were more pronounced. The diatom records, supported by chlorophyll-a and S:D indices, indicated that changes in both the near and far lakes were consistent with warming, with little discernable impact from road dust. Whilst chemical changes associated with the half-century old highway corridor appear clear, they are not yet of sufficient magnitude to elicit a directional biological response in algal assemblages.Les régions de l’Arctique subissent de plus en plus de pressions en provenance d’agresseurs environnementaux, plus particulièrement le changement climatique rapide et le développement humain. Des recherches ont permis de démontrer les incidences de la poussière calcaire émanant des routes en gravier sur la végétation et le pergélisol environnants, mais les systèmes aquatiques ont fait l’objet de très peu d’études. Ici, nous explorons : 1) si la production chronique de poussière par la route de Dempster d’une longueur de 740 km a une influence sur la chimie de l’eau et les assemblages de diatomées dans les lacs de la région du plateau Peel, dans les Territoires du Nord-Ouest; et 2) si le réchauffement régional accéléré a un effet sur ces lacs. Un ensemble de 27 variables de chimie des eaux a été évalué à partir de 28 lacs sur une distance variant entre 40 m et 26 km de la route. Des analyses paléolimnologiques de substituts biologiques (diatomées, chlorophylle-a dérivée de la spectroscopie en réflectance visible (chl-a) et indice d’échelles de chrysophytes à diatomées [S:D]) ont été effectuées sur des carottes de sédiments datées, prélevées dans deux lacs situés près de la route et dans un lac situé loin de la route, à l’extérieur de l’étendue possible du transport de la poussière. Dans les 28 sites, les taux de conductivité et de calcium enregistrés se sont répartis sur une vaste gamme de mesures. De manière générale, les lacs se trouvant à moins d’un kilomètre de distance de la route avaient une plus forte teneur en ions et en variables connexes que les lacs plus éloignés. Les analyses d’assemblages de diatomées ont permis de constater que les deux sites moins profonds à proximité de la route avaient connu des changements de composition modestes au cours des cent dernières années environ, tandis que les changements enregistrés au site plus éloigné étaient plus prononcés. Les enregistrements de diatomées, taux de chl-a et indices S:D à l’appui, ont permis de constater que les changements caractérisant tant les lacs situés à proximité qu’à distance coïncidaient avec le réchauffement, et que l’incidence de la poussière de route était à peine perceptible. Bien que les changements chimiques liés au corridor routier d’un demi-siècle semblent clairs, leur ampleur n’est toujours pas suffisante pour obtenir une réponse biologique directionnelle dans les assemblages d’algues

Indeterminate Thyroid Nodules: From Cytology to Molecular Testing

Thyroid cancer is the most common malignancy of the endocrine system. Fine-needle aspiration (FNA) biopsy of thyroid nodules has become the gold standard procedure, in terms of cost and efficacy, for guiding clinicians towards appropriate patients’ management. One challenge for cytopathologists is to accurately classify cytological specimens as benign or malignant based on cytomorphological features. In fact, with a frequency ranging from 10% to 30%, nodules are diagnosed as indeterminate. In recent years, the mutational landscape of thyroid tumors has been extensively described, and two molecular profiles have been identified: RAS-like (NRAS, HRAS, and KRAS mutations; EIF1AX mutations; BRAF K601E mutation; and PPARG and THADA fusions) and BRAFV600E-like (including BRAFV600E mutation and RET and BRAF fusions). The purpose of this review is to discuss the latest molecular findings in the context of indeterminate thyroid nodules, highlighting the role of molecular tests in patients’ management

Limited Accuracy of Pan-Trk Immunohistochemistry Screening for <i>NTRK</i> Rearrangements in Follicular-Derived Thyroid Carcinoma

Patients with advanced thyroid cancer harboring NTRK rearrangements can be treated with highly effective selective inhibitors. Immunohistochemistry (IHC) analysis, to detect Trk protein expression, represents an appealing screening strategy for NTRK rearrangements, but its efficacy has been poorly explored in thyroid cancer. The aim of this study is to investigate the diagnostic utility of Trk IHC in the identification of NTRK rearrangements. A series of 26 follicular-derived thyroid tumors, positive for NTRK rearrangements, and 28 NTRK fusion-negative controls were retrospectively analyzed by IHC using the pan-Trk monoclonal antibody (clone EPR17341) on the Ventana system. Area under the curve (AUC), sensitivity and specificity were calculated by ROC analysis. Trk expression was detected in 25 samples, including 22 out of the 26 NTRK-rearranged (84.6%) and three out of 28 NTRK-negative samples (10.7%). Four out of twenty-six NTRK-rearranged thyroid tumors were negative for Trk expression (15.4%), all carrying the ETV6/NTRK3 fusion. The AUC, sensitivity and specificity were 0.87, 0.85 and 0.89, respectively. A screening based on IHC analysis showed limited sensitivity and specificity in the identification of NTRK-rearranged tumors. Since falsely negative results could preclude the administration of effective targeted drugs, alternative detection strategies should be considered for thyroid cancer

SARS-CoV-2 spread to endocrine organs is associated with obesity: an autopsy study of COVID-19 cases

Purpose SARS-CoV-2 infection may be limited to the respiratory tract or may spread to multiple organs. Besides disease severity, factors associated with virus spread within the host are elusive. Here, we tried to identify features associated with SARS-CoV-2 spread to endocrine organs.Methods In a retrospective autoptic cohort of 51 subjects who died because of COVID-19, we analyzed the severity and type of lung pathology, patients' features and the detection of virus in thyroid, testis, adrenal gland, pancreas, anterior pituitary, and the white adipose tissue (WAT).Results The SARS-CoV-2 genome was detected in endocrine organs of 30/51 cases. The anterior pituitary and WAT were most frequently positive for virus. While pathological features of lung were not associated with the presence of virus in endocrine organs, obesity (BMI &gt; 30) was significantly associated to virus detection in pancreas (p = 0.01) and thyroid (p = 0.04). WAT infection was detected more frequently in males (p = 0.03).Conclusion In subject with obesity dying of COVID-19, the virus frequently spreads to endocrine organs. The findings emphasize the need for optimal treatment of patients with obesity at the very onset of COVID-19. Since post-COVID conditions remain a major issue worldwide, a rigorous follow-up of endocrine function-especially of thyroid and pancreas-is advocated in subjects with obesity