3,400 research outputs found

    On the classical r-matrix structure of the rational BC(n) Ruijsenaars-Schneider-van Diejen system

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    In this paper, we construct a quadratic r-matrix structure for the classical rational BC(n) Ruijsenaars-Schneider-van Diejen system with the maximal number of three independent coupling parameters. As a byproduct, we provide a Lax representation of the dynamics as well.Comment: 36 page

    Proteins in solution: Fractal surfaces in solutions

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    The concept of the surface of a protein in solution, as well of the interface between protein and 'bulk solution', is introduced. The experimental technique of small angle X-ray and neutron scattering is introduced and described briefly. Molecular dynamics simulation, as an appropriate computational tool for studying the hydration shell of proteins, is also discussed. The concept of protein surfaces with fractal dimensions is elaborated. We finish by exposing an experimental (using small angle X-ray scattering) and a computer simulation case study, which are meant as demonstrations of the possibilities we have at hand for investigating the delicate interfaces that connect (and divide) protein molecules and the neighboring electrolyte solution.Comment: 8 pages, 5 figure

    An independent, general method for checking consistency between diffraction data and partial radial distribution functions derived from them: the example of liquid water

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    There are various routes for deriving partial radial distribution functions of disordered systems from experimental diffraction (and/or EXAFS) data. Due to limitations and errors of experimental data, as well as to imperfections of the evaluation procedures, it is of primary importance to confirm that the end result (partial radial distribution functions) and the primary information (diffraction data) are consistent with each other. We introduce a simple approach, based on Reverse Monte Carlo modelling, that is capable of assessing this dilemma. As a demonstration, we use the most frequently cited set of "experimental" partial radial distribution functions on liquid water and investigate whether the 3 partials (O-O, O-H and H-H) are consistent with the total structure factor of pure liquid D_2O from neutron diffraction and that of H_2O from X-ray diffraction. We find that while neutron diffraction on heavy water is in full agreement with all the 3 partials, the addition of X-ray diffraction data clearly shows problems with the O-O partial radial distribution function. We suggest that the approach introduced here may also be used to establish whether partial radial distribution functions obtained from statistical theories of the liquid state are consistent with the measured structure factors.Comment: 6 pages, 3 figure

    Isotope and density profile effects on pedestal neoclassical transport

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    Cross-field neoclassical transport of heat, particles and momentum is studied in sharp density pedestals, with a focus on isotope and profile effects, using a radially global approach. Global effects -- which tend to reduce the peak ion heat flux, and shift it outward -- increase with isotope mass for fixed profiles. The heat flux reduction exhibits a saturation with a favorable isotopic trend. A significant part of the heat flux can be convective even in pure plasmas, unlike in the plasma core, and it is sensitive to how momentum sources are distributed between the various species. In particular, if only ion momentum sources are allowed, in global simulations of pure plasmas the ion particle flux remains close to its local value, while this may not be the case for simulations with isotope mixtures or electron momentum sources. The radial angular momentum transport that is a finite orbit width effect, is found to be strongly correlated with heat sources.Comment: 17 pages, 15 figure
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