k-core (bootstrap) percolation on complex networks: Critical phenomena and nonlocal effects

We develop the theory of the k-core (bootstrap) percolation on uncorrelated random networks with arbitrary degree distributions. We show that the k-core percolation is an unusual, hybrid phase transition with a jump emergence of the k-core as at a first order phase transition but also with a critical singularity as at a continuous transition. We describe the properties of the k-core, explain the meaning of the order parameter for the k-core percolation, and reveal the origin of the specific critical phenomena. We demonstrate that a so-called ``corona'' of the k-core plays a crucial role (corona is a subset of vertices in the k-core which have exactly k neighbors in the k-core). It turns out that the k-core percolation threshold is at the same time the percolation threshold of finite corona clusters. The mean separation of vertices in corona clusters plays the role of the correlation length and diverges at the critical point. We show that a random removal of even one vertex from the k-core may result in the collapse of a vast region of the k-core around the removed vertex. The mean size of this region diverges at the critical point. We find an exact mapping of the k-core percolation to a model of cooperative relaxation. This model undergoes critical relaxation with a divergent rate at some critical moment.Comment: 11 pages, 8 figure

Degree-degree correlations in random graphs with heavy-tailed degrees

Mixing patterns in large self-organizing networks, such as the Internet, the World Wide Web, social and biological networks are often characterized by degree-degree {dependencies} between neighbouring nodes. One of the problems with the commonly used Pearson's correlation coefficient (termed as the assortativity coefficient) is that {in disassortative networks its magnitude decreases} with the network size. This makes it impossible to compare mixing patterns, for example, in two web crawls of different size. We start with a simple model of two heavy-tailed highly correlated random variable $X$ and $Y$, and show that the sample correlation coefficient converges in distribution either to a proper random variable on $[-1,1]$, or to zero, and if $X,Y\ge 0$ then the limit is non-negative. We next show that it is non-negative in the large graph limit when the degree distribution has an infinite third moment. We consider the alternative degree-degree dependency measure, based on the Spearman's rho, and prove that it converges to an appropriate limit under very general conditions. We verify that these conditions hold in common network models, such as configuration model and Preferential Attachment model. We conclude that rank correlations provide a suitable and informative method for uncovering network mixing patterns

Random acyclic networks

Directed acyclic graphs are a fundamental class of networks that includes citation networks, food webs, and family trees, among others. Here we define a random graph model for directed acyclic graphs and give solutions for a number of the model's properties, including connection probabilities and component sizes, as well as a fast algorithm for simulating the model on a computer. We compare the predictions of the model to a real-world network of citations between physics papers and find surprisingly good agreement, suggesting that the structure of the real network may be quite well described by the random graph.Comment: 4 pages, 2 figure

The percolation critical polynomial as a graph invariant

Every lattice for which the bond percolation critical probability can be found exactly possesses a critical polynomial, with the root in [0,1] providing the threshold. Recent work has demonstrated that this polynomial may be generalized through a definition that can be applied on any periodic lattice. The polynomial depends on the lattice and on its decomposition into identical finite subgraphs, but once these are specified, the polynomial is essentially unique. On lattices for which the exact percolation threshold is unknown, the polynomials provide approximations for the critical probability with the estimates appearing to converge to the exact answer with increasing subgraph size. In this paper, I show how this generalized critical polynomial can be viewed as a graph invariant, similar to the Tutte polynomial. In particular, the critical polynomial is computed on a finite graph and may be found using the recursive deletion-contraction algorithm. This allows calculation on a computer, and I present such results for the kagome lattice using subgraphs of up to 36 bonds. For one of these, I find the prediction p_c=0.52440572..., which differs from the numerical value, p_c=0.52440503(5), by only 6.9 x 10^{-7}

Diameters in preferential attachment models

In this paper, we investigate the diameter in preferential attachment (PA-) models, thus quantifying the statement that these models are small worlds. The models studied here are such that edges are attached to older vertices proportional to the degree plus a constant, i.e., we consider affine PA-models. There is a substantial amount of literature proving that, quite generally, PA-graphs possess power-law degree sequences with a power-law exponent \tau>2. We prove that the diameter of the PA-model is bounded above by a constant times \log{t}, where t is the size of the graph. When the power-law exponent \tau exceeds 3, then we prove that \log{t} is the right order, by proving a lower bound of this order, both for the diameter as well as for the typical distance. This shows that, for \tau>3, distances are of the order \log{t}. For \tau\in (2,3), we improve the upper bound to a constant times \log\log{t}, and prove a lower bound of the same order for the diameter. Unfortunately, this proof does not extend to typical distances. These results do show that the diameter is of order \log\log{t}. These bounds partially prove predictions by physicists that the typical distance in PA-graphs are similar to the ones in other scale-free random graphs, such as the configuration model and various inhomogeneous random graph models, where typical distances have been shown to be of order \log\log{t} when \tau\in (2,3), and of order \log{t} when \tau>3

Statistical Self-Similar Properties of Complex Networks

It has been shown that many complex networks shared distinctive features, which differ in many ways from the random and the regular networks. Although these features capture important characteristics of complex networks, their applicability depends on the type of networks. To unravel ubiquitous characteristics that complex networks may have in common, we adopt the clustering coefficient as the probability measure, and present a systematic analysis of various types of complex networks from the perspective of statistical self-similarity. We find that the probability distribution of the clustering coefficient is best characterized by the multifractal; moreover, the support of the measure had a fractal dimension. These two features enable us to describe complex networks in a unified way; at the same time, offer unforeseen possibilities to comprehend complex networks.Comment: 11 pages, 4 figure

Continuous Dynamical Decoupling with Bounded Controls

We develop a theory of continuous decoupling with bounded controls from a geometric perspective. Continuous decoupling with bounded controls can accomplish the same decoupling effect as the bang-bang control while using realistic control resources and it is robust against systematic implementation errors. We show that the decoupling condition within this framework is equivalent to average out error vectors whose trajectories are determined by the control Hamiltonian. The decoupling pulses can be intuitively designed once the structure function of the corresponding SU(n) is known and is represented from the geometric perspective. Several examples are given to illustrate the basic idea. From the physical implementation point of view we argue that the efficiency of the decoupling is determined not by the order of the decoupling group but by the minimal time required to finish a decoupling cycle

Local majority dynamics on preferential attachment graphs

Suppose in a graph $G$ vertices can be either red or blue. Let $k$ be odd. At each time step, each vertex $v$ in $G$ polls $k$ random neighbours and takes the majority colour. If it doesn't have $k$ neighbours, it simply polls all of them, or all less one if the degree of $v$ is even. We study this protocol on the preferential attachment model of Albert and Barab\'asi, which gives rise to a degree distribution that has roughly power-law $P(x) \sim \frac{1}{x^{3}}$, as well as generalisations which give exponents larger than $3$. The setting is as follows: Initially each vertex of $G$ is red independently with probability $\alpha < \frac{1}{2}$, and is otherwise blue. We show that if $\alpha$ is sufficiently biased away from $\frac{1}{2}$, then with high probability, consensus is reached on the initial global majority within $O(\log_d \log_d t)$ steps. Here $t$ is the number of vertices and $d \geq 5$ is the minimum of $k$ and $m$ (or $m-1$ if $m$ is even), $m$ being the number of edges each new vertex adds in the preferential attachment generative process. Additionally, our analysis reduces the required bias of $\alpha$ for graphs of a given degree sequence studied by the first author (which includes, e.g., random regular graphs)

Spectral Analysis of Protein-Protein Interactions in Drosophila melanogaster

Within a case study on the protein-protein interaction network (PIN) of Drosophila melanogaster we investigate the relation between the network's spectral properties and its structural features such as the prevalence of specific subgraphs or duplicate nodes as a result of its evolutionary history. The discrete part of the spectral density shows fingerprints of the PIN's topological features including a preference for loop structures. Duplicate nodes are another prominent feature of PINs and we discuss their representation in the PIN's spectrum as well as their biological implications.Comment: 9 pages RevTeX including 8 figure