Climate change effects on beneficial plant-microorganism interactions

It is well known that beneficial plant-associated microorganisms may stimulate plant growth and enhance resistance to disease and abiotic stresses. The effects of climate change factors such as elevated CO2, drought and warming on beneficial plant-microorganism interactions are increasingly being explored. This now makes it possible to test whether some general patterns occur and whether different groups of plant-associated microorganisms respond differently or in the same way to climate change. Here, we review the results of 135 studies investigating the effects of climate change factors on beneficial microorganisms and their interaction with host plants. The majority of studies showed that elevated CO2 had a positive influence on the abundance of arbuscular and ectomycorrhizal fungi, whereas the effects on plant growth-promoting bacteria and endophytic fungi were more variable. In most cases, plant-associated microorganisms had a beneficial effect on plants under elevated CO2. The effects of increased temperature on beneficial plant-associated microorganisms were more variable, positive and neutral, and negative effects were equally common and varied considerably with the study system and the temperature range investigated. Moreover, numerous studies indicated that plant growth-promoting microorganisms (both bacteria and fungi) positively affected plants subjected to drought stress. Overall, this review shows that plant-associated microorganisms are an important factor influencing the response of plants to climate chang

Die Multifunktionalität von Ackerbausysteme bewerten.

Anhand eines Langzeitversuch haben wir ermittelt, wie sich verschiedene Ackerbausysteme auf mehrere Ökosystemdienstleistungen. Mittels methodischen Ansätze aus der Ökologie, haben wir ebenfalls verschiedene Ökosystem-Multifunktionalitätsindexen berechnet und die Gesamtleistung der Systeme bewertet

Bioackerbau fördert Bodenbiodiversität: Artenvielfalt von nützlichen Mykorrhizapilzen in landwirtschaftlichen Böden

The effects of organic and conventional arable farming on the species richness of beneficial soil fungi (arbuscular mycorrhizal fungi) was assessed in 26 arable fields on sandy soil in the Netherlands and in 2 arable fields on a loamy soil in Switzerland. Organically managed fields contained on average 42% more mycorrhizal fungal species than their conventional counterparts. This study shows that organic arable farming has a positive impact on the species richness of these beneficial soil fung

Zwischenfrüchte als wichtiges Puzzleteil für den pfluglosen ökologischen Landbau

The preservation of soil and soil fertility are two major concerns in order to sustain food productivity. An increasing number of studies performed in conventional farming systems indicate that reduced soil tillage can increase the quality of agricultural soils. However, until now it is unclear whether reduced soil tillage can be used to develop sustainable organic farming systems. A long-term experiment was set up in 2009 at the research station Agroscope Reckenholz-Tänikon (ART) to compare conventional and organic farming systems with and without ploughing, and to assess the contribution of cover crops in reduced tillage systems. First results show that the cultivation of cover crops has a positive impact on weed suppression and yield of winter wheat and maize, particularly under reduced tillage in organic farming syste

Der Einfluss symbiotischer Bodenpilze auf den Stickstoffzyklus

To increase nutrient use efficiency and reduce nutrient losses are key aspects for sustainable agriculture. Arbuscular mycorrhizal fungi (AMF) are an import and widespread group of plant-symbiotic soil fungi. Here we investigate the role of those soil microorganisms, for effective nutrient recycling. We conducted greenhouse and lysimeter experiments to compare the cycling of important plant nutrients in systems with high and low abundance of AMF. AMF increased plant N nutrition, reduced leaching losses of mineral N, and prevented emissions of N2O, an important greenhouse gas. The results show the importance of AMF for an effective nutrient management. Farmers should implement strategies to promote AMF in the soil, as they are an indispensable compound of sustainable agriculture

Können ökologische und bodenschonende Ackerbausysteme Dürreperioden besser überstehen?

Diese Studie fasst die Auswirkungen simulierte Dürren auf die Produktivität von drei verschiedenen Ackerkulturen zusammen, die in drei aufeinanderfolgenden Jahren für insgesamt vier Erntejahrkombinationen in einem Langzeit-Feldexperiment untersucht wurden

Soil microbiome signatures are associated with pesticide residues in arable landscapes

Pesticides are widely applied in agriculture to combat disease, pests, and weeds, leading to long-lasting contamination of agricultural soils with pesticide residues. While classical risk assessment experiments have repeatedly addressed immediate pesticide effects, we employ an ecological approach to investigate how pesticide residues persisting in soils influence the soil microbiome under realistic agricultural conditions. We assessed a wide range of soil characteristics, including the occurrence of 48 widely-used pesticides in 60 fields under conventional, no-tillage and organic management. We then tested which factors best explain soil microbiome traits. Environmental factors, including climate, geography, and soil characteristics, were the soil microbiome’s leading drivers. Remarkably, of all management factors, pesticide residues showed the strongest associations with soil microbiome traits, which were even more pronounced than the effects of cropping systems. Pesticide residues were almost exclusively positively associated with the relative abundance of 113 bacterial and 130 fungal taxa, many of them being assigned to taxa of known pesticide degraders. While fungal diversity and abundance were primarily positively associated with pesticide residues, bacterial diversity and abundance of the gene nifH - essential for biological nitrogen fixation - were negatively linked to the concentration of individual pesticide residues. Our results suggest that pesticide residues alter the soil microbiome, with potential long-term implications for the functioning of agricultural soils

Diversity of archaea and niche preferences among putative ammonia-oxidizing Nitrososphaeria dominating across European arable soils

Archaeal communities in arable soils are dominated by Nitrososphaeria, a class within Thaumarchaeota comprising all known ammonia-oxidizing archaea (AOA). AOA are key players in the nitrogen cycle and defining their niche specialization can help predicting effects of environmental change on these communities. However, hierarchical effects of environmental filters on AOA and the delineation of niche preferences of nitrososphaerial lineages remain poorly understood. We used phylogenetic information at fine scale and machine learning approaches to identify climatic, edaphic and geomorphological drivers of Nitrososphaeria and other archaea along a 3000 km European gradient. Only limited insights into the ecology of the low-abundant archaeal classes could be inferred, but our analyses underlined the multifactorial nature of niche differentiation within Nitrososphaeria. Mean annual temperature, C:N ratio and pH were the best predictors of their diversity, evenness and distribution. Thresholds in the predictions could be defined for C:N ratio and cation exchange capacity. Furthermore, multiple, independent and recent specializations to soil pH were detected in the Nitrososphaeria phylogeny. The coexistence of widespread ecophysiological differences between closely related soil Nitrososphaeria highlights that their ecology is best studied at fine phylogenetic scale.The Digging Deeper project was funded through the 2015–2016 BiodivERsA call, with national funding from the Swiss National Science Foundation (grant 31BD30-172466), the Deutsche Forschungsgemeinschaft (grant 317895346), the Swedish Research Council Formas (grant 2016-0194), the Spanish Ministerio de Economía y Competitividad (grant PCIN-2016-028) and the Agence Nationale de la Recherche (grant ANR-16-EBI3-0004-01). The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication. Sequencing was performed by the SNP&SEQ Technology Platform in Uppsala. The facility is part of the National Genomics Infrastructure (NGI) Sweden and Science for Life Laboratory. The SNP&SEQ Platform is also supported by the Swedish Research Council and the Knut and Alice Wallenberg Foundation

Agricultural management and pesticide use reduce the functioning of beneficial plant symbionts

Phosphorus (P) acquisition is key for plant growth. Arbuscular mycorrhizal fungi (AMF) help plants acquire P from soil. Understanding which factors drive AMF-supported nutrient uptake is essential to develop more sustainable agroecosystems. Here we collected soils from 150 cereal fields and 60 non-cropped grassland sites across a 3,000 km trans-European gradient. In a greenhouse experiment, we tested the ability of AMF in these soils to forage for the radioisotope 33P from a hyphal compartment. AMF communities in grassland soils were much more efficient in acquiring 33P and transferred 64% more 33P to plants compared with AMF in cropland soils. Fungicide application best explained hyphal 33P transfer in cropland soils. The use of fungicides and subsequent decline in AMF richness in croplands reduced 33P uptake by 43%. Our results suggest that land-use intensity and fungicide use are major deterrents to the functioning and natural nutrient uptake capacity of AMF in agroecosystems.The Digging Deeper project was funded through the 2015-2016 BiodivERsA COFUND call for research proposals, with the national funders Swiss National Science Foundation (grant 31BD30-172466), Deutsche Forschungsgemeinschaft (317895346), Swedish Research Council Formas (contract 2016-0194), Ministerio de Economía y Competitividad (Digging_Deeper, Ref. PCIN-2016-028) and Agence Nationale de la Recherche (ANR, France; grant ANR-16-EBI3-0004-01)