A novel metabarcoding primer pair for environmental DNA analysis of Cephalopoda (Mollusca) targeting the nuclear 18S rRNA region

Cephalopods are pivotal components of marine food webs, but biodiversity studies are hampered by challenges to sample these agile marine molluscs. Metabarcoding of environmental DNA (eDNA) is a potentially powerful technique to study oceanic cephalopod biodiversity and distribution but has not been applied thus far. We present a novel universal primer pair for metabarcoding cephalopods from eDNA, Ceph18S (Forward: 5′-CGC GGC GCT ACA TAT TAG AC-3′, Reverse: 5′-GCA CTT AAC CGA CCG TCG AC-3′). The primer pair targets the hypervariable region V2 of the nuclear 18S rRNA gene and amplifies a relatively short target sequence of approximately 200 bp in order to allow the amplification of degraded DNA. In silico tests on a reference database and empirical tests on DNA extracts from cephalopod tissue estimate that 44-66% of cephalopod species, corresponding to about 310-460 species, can be amplified and identified with this primer pair. A multi-marker approach with the novel Ceph18S and two previously published cephalopod mitochondrial 16S rRNA primer sets targeting the same region (Jarman et al. 2006 Mol. Ecol. Notes. 6, 268-271; Peters et al. 2015 Mar. Ecol. 36, 1428-1439) is estimated to amplify and identify 89% of all cephalopod species, of which an estimated 19% can only be identified by Ceph18S. All sequences obtained with Ceph18S were submitted to GenBank, resulting in new 18S rRNA sequences for 13 cephalopod tax

Ship-to-shore training for active deep-sea capacity development

Sailing on scientific expeditions as an early career researcher (ECR) offers the beneficial opportunity to gain field experience and training. However, the number of available berths to achieve the scientific goals of an expedition limits the number of onboard participants. Telepresence and remote learning can be utilized to increase the number of active participants, broadening the reach of capacity development. The 2021 iMirabilis2 expedition on board the Spanish Research Vessel Sarmiento de Gamboa used telepresence to virtually involve ECRs from several countries in deep-sea science. One year post-expedition, a survey of onshore participants was conducted to assess and quantify the effectiveness of the peer-to-peer ECR ship-to-shore scheme. During the expedition, live, interactive training via WhatsApp and Zoom was utilized by onshore ECRs more than traditional static, unidirectional methods of blog posts and pre-recorded videos. All respondents either agreed or strongly agreed that the scheme provided an inclusive and accessible platform to share deep-sea science. These results suggest similar schemes could be used to supplement shorter-duration at-sea-training, used prior to a seagoing experience to better prepare ECRs, or to allow members of the science community unable to join an expedition in person to actively participate remotely, increasing inclusivity

Changes to upper-ocean ecosystems may directly impact abyssal scavenger communities

Human pressures are changing ocean environments, such as a shift from fish- to squid-dominated ecosystems in overfished, poorly oxygenated environments. After death, carcasses of upper ocean fauna sink to the seafloor where they provide food for demersal scavengers. It is unclear how shifts in carcass type impact abyssal scavengers. We performed baited benthic camera lander deployments in the Cabo Verde Abyssal Basin to test how a shift from fish- to squid-dominated carrion could modify abyssal scavenger ecology. At the fish bait, peak scavenger abundance was greater and occurred later for the majority of observed fauna. However, removal rates of squid bait were up to 10-fold greater, and a significantly different community composition developed, favoring faster organisms with lower chemosensory thresholds. At the fish bait, slower organisms were less disadvantaged as the bait persisted for longer periods allowing the development of a more complex community and dense amphipod aggregations. The rapid squid consumption indicates that the accumulation of this type of food fall at the seafloor may not occur, preventing scientific observations necessary to estimate the importance of squid carrion to the biological C pump and deep-sea food webs. As such, the flux of squid carrion to the seafloor is likely greater than currently recognized in this part of the Atlantic. The differences observed between bait types indicate how future changes in upper ocean ecosystems may impact abyssal scavengers and their ecosystem functions, including controlling seafloor biomass, regulating the behavior of benthic fauna, and contributing to nutrient cycling and energy transfer.</p

In situ benthic community response to a phytodetritus pulse in the Cabo Verde Abyssal Basin (tropical NE Atlantic)

Ecosystem functioning, i.e. the transfer of material through a system, supports the ecosystem services deep-sea sediments provide, including carbon sequestration, nutrient regeneration, and climate regulation. To date, seven studies globally have researched in situ how various benthic groups contribute to organic matter degradation in abyssal sediments through stable isotope tracer experiments, of which only one in the Atlantic (at the Porcupine Abyssal Plain or PAP). To expand the limited knowledge base on abyssal ecosystem functioning, we performed in situ stable isotope experiments in the Cabo Verde Abyssal Basin (CVAB, tropical North-East Atlantic). The Cabo Verde marine region is an oceanographically interesting region with complex currents, resulting in strong gradients of productivity and unique ecological characteristics. We conducted 2-day in situ incubations with organic substrate (lyophilised diatom culture) labelled with 13C and 15N stable isotopes through five benthic lander deployments to 4,200 m in an area presumed mesotrophic. We assessed sediment community oxygen consumption (SCOC), dissolved inorganic carbon (DI13C) production, nutrient fluxes, and label incorporation into bacteria, large Foraminifera (&gt;300 μm), meiobenthos, and macrofauna. Results were specifically compared across the Atlantic basin to the eutrophic PAP for which all the same system components were reported (Witte et al. 2003). At CVAB, bacteria and meiobenthos dominated phytodetritus processing (91% and 8%, respectively), in contrast to PAP where macrofauna dominated (98%). Phytodetritus remineralisation was two to three times lower at CVAB compared to PAP, most likely due to the low abundance of fast responding macrofauna. However, overall phytodetritus processing efficiency at CVAB was four times greater compared to PAP. Our results support a mesotrophic regime at the CVAB lander site, and provide a unique first insight into ecosystem functioning of tropical (low-latitude) abyssal systems in the Atlantic Ocean. A better understanding of abyssal ecosystem functioning in various ocean regions, to which this study contributes, provides insight into main regulators of abyssal communities and thus may have implications for our understanding of abyssal systems under future climate scenarios.</p