Identification and characterization of a tomato introgression line with reduced wilting under drought

Population growth and climate change pose a serious challenge to food supply. Agriculture is the biggest consumer of freshwater in the world. With widespread water scarcity and expected changes in rainfall patterns, both boosting plant yield using the same amount of water and increasing the survival and yield of crops under drought are top priorites for plant biologists. The understanding of genetic and physiological mechanisms controlling water-use efficiency (WUE) and of plant resistance to drought is, however, still limited. Tomato (Solanum lycopersicum L.) is an excellent genetic model with a rich source of natural variation in its wild relatives. S. pennellii Correll, among them, is adapted to the arid conditions of the Andean region in South America and exhibits a high tolerance to drought and increased WUE, measured as biomass gained per unit of water lost. In this work, a series of crosses and screening steps were done with the aim of introducing some of the genetic determinant(s) of S. pennellii‘s adaptation to drought into cultivated tomato (miniature cultivar Micro-Tom). Selecting hybrids with delayed wilting, a homozygous line was found which showed delayed wilting upon water deprivation and increased WUE. This novel genotype, named WELL (an acronym for Water Economy Locus in Lycopersicon) exhibited pleiotropic traits, including semi-determinate growth habit, elongated internodes, and more erect, wrinkled leaves. The introgressed segment was mapped to a pericentromeric region of 42 to 54 cM on the long arm of chromosome 1, which comprises the yellow fruit epidermis pigmentation gene. Physiological analyses showed that WELL leaves have lower stomatal conductance than their Micro-Tom counterparts under drought, in spite of a similar or slightly increased stomatal density, implying more closed stomata i.e. an increased stomatal sensitivity to water deprivation in WELL leaves. Recombinant lines with reduced introgressions (1-24 cM) were generated. Their preliminary analysis indicated that some of the pleiotropic traits in WELL were not genetically linked to the delayed wilting phenotype and two of the recombinant lines appeared to have altered growth responses under drought, but this deserves closer examination

Reduced arbuscular mycorrhizal colonization in tomato ethylene mutants

Plant hormones are likely key regulators of arbuscular mycorrhizae (AM) development. However, their roles in AM are not well known. Here mutants in five hormone classes introgressed in a single tomato (Lycopersicon esculentum Mill. Syn Solanum lycopersicum L.) background (cv. Micro-Tom) were used to determine their effects on AM development and the expression of defense-related genes (chitinases and b-1,3-glucanases) in roots. Under low P conditions, mutant epinastic (epi) and Never ripe (Nr), ethylene overproducer and low sensitivity, respectively, had the intraradical colonization by Glomus clarum highly inhibited, as compared to the control Micro-Tom (MT). No significant alterations in fungal colonization were observed in mutants affecting other hormone classes. Under low P conditions, the steady state levels of transcripts encoding a class I basic chitinase (chi9) were higher in mycorrhizal epi and Nr mutant roots as compared to MT controls. In contrast the steady state levels of a class III acidic b-1,3-glucanase (TomPR-Q'a) transcripts in mycorrhizal epi mutant roots were significantly lower than in mycorrhizal MT roots. Root colonization in epi mutants was accompanied by several alterations in fungal morphology, as compared to root colonization in MT controls. The data suggest that ethylene may play an important role in controlling intraradical arbuscular mycorrhizal fungal growth.Os hormônios vegetais são possíveis reguladores chave do desenvolvimento de micorrizas arbusculares (MAS). Contudo, seus papéis em MA são pouco conhecidos. No presente estudo, foram utilizados mutantes em cinco classes hormonais introgredidos em uma única cultivar (cv. Micro-Tom) de tomateiro (Lycopersicon esculentum Mill. Syn Solanum lycopersicum L.) para determinar seus efeitos no desenvolvimento de MA e expressão de genes relacionados à defesa (quitinases e b-1,3-glucanases) em raízes. Sob condição de baixo P, os mutantes epinastic (epi) e Never ripe (Nr), os quais são super produtores e pouco sensíveis a etileno, respectivamente, tiveram a colonização intra-radicular por Glomus clarum inibida quando comparada com o controle Micro-Tom (MT). Não se observou alterações significativas na colonização fúngica nos mutantes afetando outras classes hormonais. Sob condição de baixo P, o nível de transcritos codificando uma quitinase básica de classe I (chi9) foi mais elevado em raízes micorrizadas dos mutantes epi e Nr, quando comparado com o controle MT. Em contraste, o nível de transcritos de uma b-1,3-glucanase ácida da classe III (TomPR-Q'a) em raízes micorrizadas do mutante epi foi significativamente menor que em raízes micorrizadas de MT. A colonização de raízes no mutante epi foi acompanhada por várias alterações na morfologia fúngica, quando comparada com o controle MT. Os resultados sugerem que o etileno pode desempenhar um importante papel controlando o crescimento fúngico intra-radicular nas MAS

Convergence of developmental mutants into a single tomato model system: 'Micro-Tom' as an effective toolkit for plant development research

<p>Abstract</p> <p>Background</p> <p>The tomato (<it>Solanum lycopersicum </it>L.) plant is both an economically important food crop and an ideal dicot model to investigate various physiological phenomena not possible in <it>Arabidopsis thaliana</it>. Due to the great diversity of tomato cultivars used by the research community, it is often difficult to reliably compare phenotypes. The lack of tomato developmental mutants in a single genetic background prevents the stacking of mutations to facilitate analysis of double and multiple mutants, often required for elucidating developmental pathways.</p> <p>Results</p> <p>We took advantage of the small size and rapid life cycle of the tomato cultivar Micro-Tom (MT) to create near-isogenic lines (NILs) by introgressing a suite of hormonal and photomorphogenetic mutations (altered sensitivity or endogenous levels of auxin, ethylene, abscisic acid, gibberellin, brassinosteroid, and light response) into this genetic background. To demonstrate the usefulness of this collection, we compared developmental traits between the produced NILs. All expected mutant phenotypes were expressed in the NILs. We also created NILs harboring the wild type alleles for <it>dwarf</it>, <it>self-pruning </it>and <it>uniform fruit</it>, which are mutations characteristic of MT. This amplified both the applications of the mutant collection presented here and of MT as a genetic model system.</p> <p>Conclusions</p> <p>The community resource presented here is a useful toolkit for plant research, particularly for future studies in plant development, which will require the simultaneous observation of the effect of various hormones, signaling pathways and crosstalk.</p

Self-pruning acts synergistically with diageotropica to guide auxin responses and proper growth form

The SELF PRUNING (SP) gene is a key regulator of growth habit in tomato (Solanum lycopersicum). It is an ortholog of TERMINAL FLOWER1, a phosphatidylethanolamine-binding protein with antiflorigenic activity in Arabidopsis (Arabidopsis thaliana). A spontaneous loss-of-function mutation (sp) has been bred into several industrial tomato cultivars, as it produces a suite of pleiotropic effects that are favorable for mechanical harvesting, including determinate growth habit, short plant stature, and simultaneous fruit ripening. However, the physiological basis for these phenotypic differences has not been thoroughly explained. Here, we show that the sp mutation alters polar auxin transport as well as auxin responses, such as gravitropic curvature and elongation of excised hypocotyl segments. We also demonstrate that free auxin levels and auxin-regulated gene expression patterns are altered in sp mutants. Furthermore, diageotropica, a mutation in a gene encoding a cyclophilin A protein, appears to confer epistatic effects with sp. Our results indicate that SP affects the tomato growth habit at least in part by influencing auxin transport and responsiveness. These findings suggest potential novel targets that could be manipulated for controlling plant growth habit and improving productivity

Control of water-use efficiency by florigen

A major issue in modern agriculture is water loss through stomata during photosynthetic carbon assimilation. In water‐limited ecosystems, annual plants have strategies to synchronize their growth and reproduction to the availability of water. Some species or ecotypes of flowers are early to ensure that their life cycles are completed before the onset of late season terminal drought (“drought escape”). This accelerated flowering correlates with low water‐use efficiency (WUE). The molecular players and physiological mechanisms involved in this coordination are not fully understood. We analyzed WUE using gravimetry, gas exchange, and carbon isotope discrimination in florigen deficient (sft mutant), wild‐type (Micro‐Tom), and florigen over‐expressing (SFT‐ox) tomato lines. Increased florigen expression led to accelerated flowering time and reduced WUE. The low WUE of SFT‐ox was driven by higher stomatal conductance and thinner leaf blades. This florigen‐driven effect on WUE appears be independent of abscisic acid (ABA). Our results open a new avenue to increase WUE in crops in an ABA‐independent manner. Manipulation of florigen levels could allow us to produce crops with a life cycle synchronized to water availability

Abscisic acid acts essentially on stomata, not on xylem, to improve drought resistance in tomato

Drought resistance is essential for plant production under water-limiting environments. Abscisic acid (ABA) plays a critical role in stomata but its impact on hydraulic function beyond the stomata is far less studied. We selected genotypes differing in their ability to accumulate ABA to investigate its role in drought-induced dysfunction. All genotypes exhibited similar leaf and stem embolism resistance regardless of differences in ABA levels. Their leaf hydraulic resistance was also similar. Differences were only observed between the two extreme genotypes: sitiens (sit; a strong ABA-deficient mutant) and sp12 (a transgenic line that constitutively overaccumulates ABA), where the water potential inducing 50% embolism was 0.25 MPa lower in sp12 than in sit. Maximum stomatal and minimum leaf conductances were considerably lower in plants with higher ABA (wild type [WT] and sp12) than in ABA-deficient mutants. Variations in gas exchange across genotypes were associated with ABA levels and differences in stomatal density and size. The lower water loss in plants with higher ABA meant that lethal water potentials associated with embolism occurred later during drought in sp12 plants, followed by WT, and then by the ABA-deficient mutants. Therefore, the primary pathway by which ABA enhances drought resistance is via declines in water loss, which delays dehydration and hydraulic dysfunction

De novo domestication of wild tomato using genome editing

Breeding of crops over millennia for yield and productivity1 has led to reduced genetic diversity. As a result, beneficial traits of wild species, such as disease resistance and stress tolerance, have been lost2. We devised a CRISPR–Cas9 genome engineering strategy to combine agronomically desirable traits with useful traits present in wild lines. We report that editing of six loci that are important for yield and productivity in present-day tomato crop lines enabled de novo domestication of wild Solanum pimpinellifolium. Engineered S. pimpinellifolium morphology was altered, together with the size, number and nutritional value of the fruits. Compared with the wild parent, our engineered lines have a threefold increase in fruit size and a tenfold increase in fruit number. Notably, fruit lycopene accumulation is improved by 500% compared with the widely cultivated S. lycopersicum. Our results pave the way for molecular breeding programs to exploit the genetic diversity present in wild plants

Analysis of arbuscular mycorrhiza development in hormonal mutants of tomato (Lycopersicon esculentum cv Micro-Tom)

O presente trabalho teve como objetivo estudar o efeito que a alteração na sensibilidade ou metabolismo hormonal em uma planta hospedeira poderia ter sobre o desenvolvimento de micorrizas arbusculares (MAs). Para tal, uma coleção de mutantes hormonais de tomateiro (Lycopersicon esculentum) introgredidos na cultivar miniatura Micro-Tom foi inoculada com o fungo Glomus clarum, em dos níveis de P no substrato. Foram realizados 3 experimentos, com os genótipos Never ripe (parcialmente insensível ao etileno), epinastic (superprodutor de etileno), bushy root (parcialmente insensível a citocinina), diageotropica (parcialmente insensível a auxina), procera (supersensível a giberelina) e notabilis (deficiente em ABA). Os parâmetros avaliados foram: porcentagem de colonização micorrízica, massa seca da parte aérea e massa seca da raiz em condições de P suficiente e insuficiente. Com os genótipos que apresentaram maiores alterações no desenvolvimento de MAs, Never ripe e epinastic , foram conduzidas análises morfológicas por meio de microscopia de luz, dosagem de P na parte aérea e estudos de expressão gênica através da técnica de PCR em tempo real (PCR Real-Time). Concluiu-se que, nas condições do presente trabalho, o grupo hormonal que mostrou a maior influencia sobre a formação de MAs foi o etileno, sendo que o seu efeito parece ser tanto estimulatório quanto inibitório. Contudo, os resultados de expressão de genes de defesa não permitem explicar as diferenças observadas.The aim of the present work was to study the effect that alterations in hormonal sensitivity and metabolism in a host plant could have in the development of arbuscular mycorrhizae (AM). In this regard, a series of hormone-related mutants introgressed in the tomato (Lycopersicon esculentum) cultivar Micro-Tom were inoculated with the fungus Glomus clarum, in two different levels of substrate P. Three experiments were performed, using the genotypes Never ripe (partially insensitive to ethylene), epinastic (ethylene overproducer), bushy root (partially insensitive to cytokinin), diageotropica (partially insensitive to auxin), procera (gibberellin hypersensitive) and notabilis (ABA-deficient). The following parameters were assessed: mycorrhizal colonization percentage, shoot and root dry mass, under conditions of either sufficient or insufficient P on the substrate. Further analyses, such as root morphology, P dosage and gene expression quantification (through Real-Time PCR), were performed on the genotypes which presented the most alterations in mycorrhizal development, namely Never ripe and epinastic. It was concluded that the hormone showing most influence on AM formation was ethylene. Its effect appears to be either stimulatory o inhibitory. In any case, defense gene expression alone could account for the observed differences

Genome editing as a tool to achieve the crop ideotype and de novo domestication of wild relatives: case study in tomato

The ideotype is a theoretical model of an archetypal cultivated plant. Recent progress in genome editing is aiding the pursuit of this ideal in crop breeding. Breeding is relatively straightforward when the traits in question are monogenic in nature and show Mendelian inheritance. Conversely, traits with a diffuse, polygenic basis such as abiotic stress resistance are more difficult to harness. In recent years, many genes have been identified that are important for plant domestication and act by increasing yield, grain or fruit size or altering plant architecture. Here, we propose that (a) key monogenic traits whose physiology has been unveiled can be molecularly tailored to achieve the ideotype; and (b) wild relatives of crops harboring polygenic stress resistance genes or other traits of interest could be de novo domesticated by manipulating monogenic yield-related traits through state-of-the-art gene editing techniques. An overview of the genomic and physiological challenges in the world’s main staple crops is provided. We focus on tomato and its wild Solanum (section Lycopersicon) relatives as a suitable model for molecular design in the pursuit of the ideotype for elite cultivars and to test de novo domestication of wild relatives