Transcriptome profiling of genes regulated by phosphate-solubilizing bacteria Bacillus megaterium P68 in potato (Solanum tuberosum L.)

The insoluble phosphorus in the soil is extremely difficult to be absorbed and used directly through the potato root system. Although many studies have reported that phosphorus-solubilizing bacteria (PSB) can promote plant growth and uptake of phosphorus, the molecular mechanism of phosphorus uptake and growth by PSB has not been investigated yet. In the present study, PSB were isolated from rhizosphere soil in soybean. The data of potato yield and quality revealed that the strain P68 was the most effective In the present study, PSB identification, potato field experiment, pot experiment and transcriptome profiling to explored the role of PSB on potato growth and related molecular mechanisms. The results showed that the P68 strain (P68) was identified as Bacillus megaterium by sequencing, with a P-solubilizing ability of 461.86 mg·L−1 after 7-day incubation in National Botanical Research Institute’s Phosphate (NBRIP) medium. Compared with the control group (CK), P68 significantly increased the yield of potato commercial tubers by 17.02% and P accumulation by 27.31% in the field. Similarly, pot trials showed that the application of P68 significantly increased the biomass, total phosphorus content of the potato plants, and available phosphorus of the soil up by 32.33, 37.50, and 29.15%, respectively. Furthermore, the transcriptome profiling results of the pot potato roots revealed that the total number of bases was about 6G, and Q30 (%) was 92.35–94.8%. Compared with the CK, there were a total of 784 differential genes (DEGs) regulated when treated with P68, which 439 genes were upregulated and 345 genes were downregulated. Interestingly, most of the DEGs were mainly related to cellular carbohydrate metabolic process, photosynthesis, and cellular carbohydrate biosynthesis process. According to the KEGG pathway analysis, a total of 46 categorical metabolic pathways in the Kyoto Encyclopedia of Genes and Genomes (KEGG) database were annotated to 101 DEGs found in potato roots. Compared with the CK, most of the DEGs were mainly enriched in glyoxylate and dicarboxylate metabolism (sot00630), nitrogen metabolism (sot00910), tryptophan metabolism (sot00380), and plant hormone signal transduction (sot04075), and these DEGs might be involved in the interactions between Bacillus megaterium P68 and potato growth. The qRT-PCR analysis of differentially expressed genes showed that inoculated treatments P68 significantly upregulated expression of the phosphate transport, nitrate transport, glutamine synthesis, and abscisic acid regulatory pathways, respectively, and the data from qRT-PCR were consistent with that obtained from RNA-seq. In summary, PSB may be involved in the regulation of nitrogen and phosphorus nutrition, glutaminase synthesis, and abscisic acid-related metabolic pathways. This research would provide a new perspective for studying the molecular mechanism of potato growth promotion by PSB in the level of gene expression and related metabolic pathways in potato roots under the application of Bacillus megaterium P68

Redox control on the chromium distribution of tropical red soils revealed by Cr isotopes

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Redox control of chromium in the red soils from China evidenced by Cr stable isotopes

International audienceWith chromium isotopes, we study the intricate dynamics of adsorption and redox processes in soil ecosystems, focusing on chromium's behaviour, in red soil profiles enriched with iron-manganese nodules (FMNs) in South China. Key findings reveal that the primary geological source of chromium in the red soil profiles is the weathering of colluvium parent minerals. FMNs have higher chromium concentrations (325-1,451 µg/g) compared to surrounding soils (95-247 µg/g) and display stable δ53Cr values (0.78 ± 0.17‰), indicating their role as stable chromium repositories, reflecting historical processes. Furthermore, by isolating chromium associated with iron oxides (FeO) and silicate minerals (ReS) within FMNs and surrounding soils using CBD extractions, we show that FeO predominantly carry chromium, particularly in FMNs. The δ53Cr values of FeO fractions consistently exhibit heavier signatures than ReS fractions, suggesting the sequestration of isotopically heavy chromium (VI) during Fe oxide precipitation. Fluctuations in soil’s redox, rather than land use, play a pivotal role in controlling the precipitation of Fe oxides in surrounding soils and the formation of FMNs, thus influencing chromium mobility. This highlights the significance of these factors when utilizing chromium isotopic techniques for source tracking in soil systems, contributing to our understanding of chromium's behaviour in soil environments

Influence of agricultural organic inputs and their aging on the transport of ferrihydrite nanoparticles: From enhancement to inhibition

Organic matter effectively regulates nanoparticles transport. However, little is known about the effect of agricultural organic inputs on the transport of ferrihydrite nanoparticles (FHNPs) during aging. In this study, columns were filled with sand mixed with varying proportions of pristine, water-processing, or alkali-processing biochar or swine manure and used to simulate the release of organic matter and changes in surface roughness of sand grains during field aging. The influence of these factors on FHNPs transport was investigated using column experiments. The dissolved organic matter (DOM) (0.008–24.8 mg L−1) released from agricultural organic inputs decreased the zeta potential of the FHNPs from 30.8 mV to 14.6–-48.9 mV and further caused electrostatic repulsion, osmotic repulsion, and elastic-steric repulsion between FHNPs and mixed sand, thus enhancing FHNPs transport. Ferrihydrite nanoparticles transport increased with increasing content of biochar and swine manure due to the increased amount of DOM. However, with the presence of organic inputs, surface roughness up to a certain degree (the increase in specific surface area up to 4.6 m2) became the dominant inhibition factor affecting FHNPs transport. After DOM release, agricultural organic inputs decreased the enhancement of FHNPs transport; with the increase input, their rougher surface gradually increased inhibition of FHNPs transport. The strongest FHNPs retention in the alkali-processing biochar (0.2–10%) or swine manure (1–2%) mixed sand columns indicated that fully aged agricultural organic inputs strongly inhibited FHNPs transport. Our findings provided novel insights into the critical influence of agricultural organic inputs and their aging on FHNPs transport, which changed gradually from enhancement to inhibition gradually.</p

Impacts of earthworm species on soil acidification, Al fractions, and base cation release in a subtropical soil from China

International audienceSoil-exchangeable aluminum (Al) has toxic effects on living organisms in acidic soils. Earthworm presence and activity can alter soil pH, which has a significant influence on Al toxicity. However, the effects of earthworms on soil Al toxicity and fractions are still largely unknown. This laboratory study focused on the effects of three earthworm species (endogeics Pontoscolex corethrurus and Amynthas robustus, anecis Amynthas aspergillum) on soil acidification, Al fraction distribution, and base cation release. Three native earthworm species and a soil (latosolic red soil) collected from a botanical garden in South China were incubated under laboratory conditions. After 40 days of incubation, six Al fractions in soil, namely exchangeable (AlEx), weakly organically bound (AlOrw), organically bound (AlOr), amorphous (AlAmo), Al occluded in crystalline iron oxides (AlOxi), and amorphous aluminosilicate and gibbsite (AlAag) fractions, were extracted using a sequential procedure. Soil pH; organic carbon; total nitrogen; total Al (AlTotal); exchangeable K, Na, Ca, Mg contents; and CEC were determined as well. Compared to control soil, pH values increased by 0.79, 0.41, and 0.57 units in casts in the presence of P. corethrurus, A. robustus, and A. aspergillum, and 0.70, 0.32, and 0.50 units in non-ingested soil, respectively. Compared to control soil, the 61.7%, 30.7%, and 36.1% of AlEx contents in casts and 68.5%, 25.9%, and 39.0% of AlEx in non-ingested soil significantly decreased with the addition of P. corethrurus, A. robustus, and A. aspergillum, respectively. Moreover, compared to control soil, the 78.7%, 37.7%, and 40.1% of exchangeable Ca2+ and 12.3%, 24.7%, and 26.8% of exchangeable Mg2+ contents in casts significantly increased with the presence of P. corethrurus, A. robustus, and A. aspergillum, respectively. Soil treated with P. corethrurus had higher soil pH values, exchangeable Ca2+ contents, and lower AlEx than those with A. robustus and A. aspergillum. Results of principal component analyses showed that P. corethrurus, A. robustus, and A. aspergillum casts and non-ingested soil differ for soil pH, Al fractions, and exchangeable base cations release. These results indicate that earthworms, especially P. corethrurus, can reduce soil Al toxicity, increase soil pH, and affect the release of exchangeable base cations

Effects of soil acid stress on the survival, growth, reproduction, antioxidant enzyme activities, and protein contents in earthworm (Eisenia fetida)

International audienceThis study focused on the study of earthworm survival, growth, reproduction, enzyme activities, and protein contents to evaluate and predict the effects of different soil pH levels and determine the optimal risk assessment indicators for the effects. Survival rate, growth rate, and cocoon number as well as four enzyme (glutathione peroxidase (GSH-PX), superoxide dismutase (SOD), peroxidase (POD), and catalase (CAT)) activities and two proteins (total protein (TP) and metallothionein (MT)) contents in earthworms were determined to characterize the responses of earthworm activity to five soil pH levels. These biological datasets (survival, growth, and reproduction) were compared with biochemical indexes (GSH-PX, SOD, POD, CAT, TP, and MT), mainly using biphasic dose-response models. The results indicated that the soil pH value had significant inhibitory effects on the survival, growth, and reproduction of earthworms beginning with 3.0, 4.0, and 5.2, respectively. The dose-response models (J-shaped and inverted U-shaped curves) statistics indicated that the critical values (ECZEP) of the GSH-PX, SOD, POD, CAT, TP, and MT inhibited by soil acid stress were 3.46, 3.76, 3.35, 3.54, 3.50, and 3.96 (average 3.60), respectively. In the present study, the fitting curve analysis showed that the responses of the CAT activities and TP and MT contents in earthworm in response to soil pH have the behavior of hormesis

Enhanced mechanical energy absorption via localized viscoplasticity of nano-cellular polymer coating under supersonic impact loading

Materials under viscoplastic deformation at ultrahigh strain rates (>106 s−1) often demonstrate anomalous properties due to thermal and stress localization. As a model system, thermoplastic nano-cellular material (NCM) coatings are produced by consolidating microscopic polystyrene shells of nanoscale thin walls using self-limiting electrospray deposition. As both the spatial and temporal characterization scales are crucial, the NCMs are characterized by laser-induced projectile impact test (LIPIT) for understanding their ultrahigh-strain-rate plasticity originating from their porous structures. In LIPIT, supersonic collisions of rigid microspheres create these extreme physical conditions at the microscale. Viscoplastic vertical densification without the Poisson effect is the foremost process in the ultrahigh-rate plastic deformation of the NCM coatings. When the extreme nature of the viscoplastic deformation is promoted by increasing the porosity and reducing the thickness of NCM coatings, significantly more energy dissipation is observed without more material due to the localized feedback between adiabatic plastic deformation and thermal softening. Despite the stochastic and isotropic structural architecture of the NCM, the specific energy absorption of the NCM is high as 170 kJ/kg at the deformation speed of 400 m/s, which is attributed to the nanoscale effects from the thin wall thickness of NCM coatings. The findings suggest the general design rule for enhancing specific energy absorption by creating viscoplastic hot spots under impact loading

Data_Sheet_1_Transcriptome profiling of genes regulated by phosphate-solubilizing bacteria Bacillus megaterium P68 in potato (Solanum tuberosum L.).docx

The insoluble phosphorus in the soil is extremely difficult to be absorbed and used directly through the potato root system. Although many studies have reported that phosphorus-solubilizing bacteria (PSB) can promote plant growth and uptake of phosphorus, the molecular mechanism of phosphorus uptake and growth by PSB has not been investigated yet. In the present study, PSB were isolated from rhizosphere soil in soybean. The data of potato yield and quality revealed that the strain P68 was the most effective In the present study, PSB identification, potato field experiment, pot experiment and transcriptome profiling to explored the role of PSB on potato growth and related molecular mechanisms. The results showed that the P68 strain (P68) was identified as Bacillus megaterium by sequencing, with a P-solubilizing ability of 461.86 mg·L−1 after 7-day incubation in National Botanical Research Institute’s Phosphate (NBRIP) medium. Compared with the control group (CK), P68 significantly increased the yield of potato commercial tubers by 17.02% and P accumulation by 27.31% in the field. Similarly, pot trials showed that the application of P68 significantly increased the biomass, total phosphorus content of the potato plants, and available phosphorus of the soil up by 32.33, 37.50, and 29.15%, respectively. Furthermore, the transcriptome profiling results of the pot potato roots revealed that the total number of bases was about 6G, and Q30 (%) was 92.35–94.8%. Compared with the CK, there were a total of 784 differential genes (DEGs) regulated when treated with P68, which 439 genes were upregulated and 345 genes were downregulated. Interestingly, most of the DEGs were mainly related to cellular carbohydrate metabolic process, photosynthesis, and cellular carbohydrate biosynthesis process. According to the KEGG pathway analysis, a total of 46 categorical metabolic pathways in the Kyoto Encyclopedia of Genes and Genomes (KEGG) database were annotated to 101 DEGs found in potato roots. Compared with the CK, most of the DEGs were mainly enriched in glyoxylate and dicarboxylate metabolism (sot00630), nitrogen metabolism (sot00910), tryptophan metabolism (sot00380), and plant hormone signal transduction (sot04075), and these DEGs might be involved in the interactions between Bacillus megaterium P68 and potato growth. The qRT-PCR analysis of differentially expressed genes showed that inoculated treatments P68 significantly upregulated expression of the phosphate transport, nitrate transport, glutamine synthesis, and abscisic acid regulatory pathways, respectively, and the data from qRT-PCR were consistent with that obtained from RNA-seq. In summary, PSB may be involved in the regulation of nitrogen and phosphorus nutrition, glutaminase synthesis, and abscisic acid-related metabolic pathways. This research would provide a new perspective for studying the molecular mechanism of potato growth promotion by PSB in the level of gene expression and related metabolic pathways in potato roots under the application of Bacillus megaterium P68.</p