2.5D Deep Learning for CT Image Reconstruction using a Multi-GPU implementation

While Model Based Iterative Reconstruction (MBIR) of CT scans has been shown to have better image quality than Filtered Back Projection (FBP), its use has been limited by its high computational cost. More recently, deep convolutional neural networks (CNN) have shown great promise in both denoising and reconstruction applications. In this research, we propose a fast reconstruction algorithm, which we call Deep Learning MBIR (DL-MBIR), for approximating MBIR using a deep residual neural network. The DL-MBIR method is trained to produce reconstructions that approximate true MBIR images using a 16 layer residual convolutional neural network implemented on multiple GPUs using Google Tensorflow. In addition, we propose 2D, 2.5D and 3D variations on the DL-MBIR method and show that the 2.5D method achieves similar quality to the fully 3D method, but with reduced computational cost.Comment: IEEE Asilomar conference on signals systems and computers, 201

Pea aphid winged and wingless males exhibit reproductive, gene expression, and lipid metabolism differences

Alternative, intraspecific phenotypes offer an opportunity to identify the mechanistic basis of differences asso- ciated with distinctive life history strategies. Wing dimorphic insects, in which both flight-capable and flight- incapable individuals occur in the same population, are particularly well-studied in terms of why and how the morphs trade offflight for reproduction. Yet despite a wealth of studies examining the differences between fe- male morphs, little is known about male differences, which could arise from different causes than those acting on females. Here we examined reproductive, gene expression, and biochemical differences between pea aphid ( Acyrthosiphon pisum ) winged and wingless males. We find that winged males are competitively superior in one- on-one mating circumstances, but wingless males reach reproductive maturity faster and have larger testes. We suggest that males tradeoffincreased local matings with concurrent possible inbreeding for outbreeding and in- creased ability to find mates. At the mechanistic level, differential gene expression between the morphs revealed a possible role for activin and insulin signaling in morph differences; it also highlighted genes not previously identified as being functionally important in wing polymorphism, such as genes likely involved in sperm produc- tion. Further, we find that winged males have higher lipid levels, consistent with their use as flight fuel, but we find no consistent patterns of different levels of activity among five enzymes associated with lipid biosynthesis. Overall, our analyses provide evidence that winged versus wingless males exhibit differences at the reproductive, gene expression, and biochemical levels, expanding the field’s understanding of the functional aspects of morph differences

Allograft or autograft in skeletally immature anterior cruciate ligament reconstruction: A prospective evaluation using both partial and complete transphyseal techniques

Objective: We compared autografts and allograft using partial and complete transphyseal anterior cruciate ligament (ACL) reconstruction techniques among skeletally immature individuals. Methods: Male and females younger than 18 and 16 years old, respectively, diagnosed with ACL tear from April 2006 to March 2012 entered the study. One group had four-strand hamstring autograft, and the other had tibialis posterior allograft reconstruction. Those who had allografts either had hyper-laxity or recurvatum. Results: Achieved mean (± SD) 2000 International Knee Documentation Committee subjective score was not statistically different (P = 0.385) between allograft (n = 13) (84.3 ± 3.2) and autograft groups (n = 18) (85.6 ± 4.4). Mean Knee injury and Osteoarthritis Outcome Score (KOOS) subscale Knee-Related Quality of Life at 2 years was 78.0 ± 7.2 and 75 ± 7.4 for allograft and autograft groups, respectively (p = 0.261). Mean 2-year KOOS subscale Sports and Recreation was 82.1 ± 5.8 and 84.8 ± 6.6 for allograft and autograft groups, respectively (p = 0.244). No patient reported instability, giving way, or locking of the knee. Pivot shift test was negative in all patients; however, a minor positive Lachman test was found in six cases (46) within the allograft group and seven cases (39) in the autograft group. One postoperative septic arthritis was documented in the autograft group. Conclusion: Considering existing concern that joint laxity and recurvatum are among the precursors of non-contact ACL injury in adolescents, bone-patellar-bone autografts are not applicable in this age group because of the open physis; furthermore, considering that hamstring autografts are insufficient (size thickness and stretchability), we recommend soft tissue allografts for ACL reconstruction in skeletally immature patients. © 2019 The Author(s)

High temperature thermoreflectance imaging and transient Harman characterization of thermoelectric energy conversion devices

Advances in thin film growth technology have enabled the selective engineering of material properties to improve the thermoelectric figure of merit and thus the efficiency of energy conversion devices. Precise characterization at the operational temperature of novel thermoelectric materials is crucial to evaluate their performance and optimize their behavior. However, measurements on thin film devices are subject to complications from the growth substrate, non-ideal contacts, and other thermal and electrical parasitic effects. In this manuscript, we determine the cross-plane thermoelectric material properties in a single measurement of a 25 mu m InGaAs thin film with embedded ErAs (0.2%) nanoparticles using the bipolar transient Harman method in conjunction with thermoreflectance thermal imaging at temperatures up to 550K. This approach eliminates discrepancies and potential device degradation from the multiple measurements necessary to obtain individual material parameters. In addition, we present a strategy for optimizing device geometry to mitigate the effect of both electrical and thermal parasitics during the measurement. Finite element method simulations are utilized to analyze non-uniform current and temperature distributions over the device area as well as the three dimensional current path for accurate extraction of material properties from the thermal images. Results are compared with independent in-plane and 3 omega measurements of thermoelectric material properties for the same material composition and are found to match reasonably well; the obtained figure of merit matches within 15% at room and elevated temperatures. (C) 2014 AIP Publishing LLC

Investigating the Role of Having an Avatar in Virtual Reality on Pain Alleviation and Embodiment in Patients With Pain Using Electroencephalogram: A Neuroimaging Protocol

Chronic Pain (CP) is prevalent in industrialized countries and stands among the top 10 causes of disability. Given the widespread problems of pharmacological treatments such as opioids, a need to find alternative therapeutic approaches has emerged. Virtual Reality (VR) has shown potential as a non-pharmacological alternative for controlling pain over the past 20 years. The effectiveness of VR has been demonstrated in treating CP, and it has been suggested that VR’s analgesic effects may be associated with the Sense of Embodiment (SoE): the sensation of being inside, having and controlling a virtual body in VR. Studies have shown correlations among brain signals, reported pain and a SoE, and correlations have been observed between using an avatar in VR and pain alleviation among CP patients. However, little has been published about the changes in brain physiology associated with having an avatar in VR, and current published studies present methodological issues. Defining a proper methodology to investigate the underlying brain mechanisms of pain, a SoE associated with having an avatar in VR, and its effect on reducing pain in CP patients is key to the emerging field of VR-analgesia. Here, we propose an intervention trial design (test/intervention/test) to evaluate the effects of having a virtual avatar in VR on pain levels and SoE in CP patients using Electroencephalogram (EEG) recordings. Resting-state EEG recordings, perceived pain levels, and SoE scores will be collected before and after the VR intervention. Patients diagnosed with CP will be recruited from local pain clinics and pseudo-randomly assigned to one of two groups—with or without an avatar. Patients will experience a 10-min VR intervention built to treat CP while their EEG signals are recorded. In articulating the study procedure, we propose a framework for future studies that explores the mechanisms of VR-analgesia in patients with chronic pain

Basin-scale gyres and mesoscale eddies in large lakes: a novel procedure for their detection and characterization, assessed in Lake Geneva

In large lakes subject to the Coriolis force, basin-scale gyres and mesoscale eddies, i.e. rotating coherent water masses, play a key role in spreading biochemical materials and energy throughout the lake. In order to assess the spatial and temporal extent of gyres and eddies, their dynamics and vertical structure, as well as to validate their prediction in numerical simulation results, detailed transect field observations are needed. However, at present it is difficult to forecast when and where such transect field observations should be taken. To overcome this problem, a novel procedure combining 3D numerical simulations, statistical analyses, and remote sensing data was developed that permits determination of the spatial and temporal patterns of basin-scale gyres during different seasons. The proposed gyre identification procedure consists of four steps: (i) data pre-processing, (ii) extracting dominant patterns using empirical orthogonal function (EOF) analysis of Okubo–Weiss parameter fields, (iii) defining the 3D structure of the gyre, and (iv) finding the correlation between the dominant gyre pattern and environmental forcing. The efficiency and robustness of the proposed procedure was validated in Lake Geneva. For the first time in a lake, detailed field evidence of the existence of basin-scale gyres and (sub)mesoscale eddies was provided by data collected along transects whose locations were predetermined by the proposed procedure. The close correspondence between field observations and detailed numerical results further confirmed the validity of the model for capturing large-scale current circulations as well as (sub)mesoscale eddies. The results also indicated that the horizontal gyre motion is mainly determined by wind stress, whereas the vertical current structure, which is influenced by the gyre flow field, primarily depends on thermocline depth and strength. The procedure can be applied to other large lakes and can be extended to the interaction of biological–chemical–physical processes.</p

A New Image Analysis Based Method for Measuring Electrospun Nanofiber Diameter

In this paper, a new image analysis based method for electrospun nanofiber diameter measurement has been presented. The method was tested by a simulated image with known characteristics and a real web. Mean (M) and standard deviation (STD) of fiber diameter obtained using this method for the simulated image were 15.02 and 4.80 pixels respectively, compared to the true values of 15.35 and 4.47 pixels. For the real web, applying the method resulted in M and STD of 324 and 50.4 nm which are extremely close to the values of 319 and 42 nm obtained using manual method. The results show that this approach is successful in making fast, accurate automated measurements of electrospun fiber diameters

Electro-plating and characterisation of cadmium sulphide thin films using ammonium thiosulphate as the sulphur source

Cadmium sulphide (CdS) thin films have been successfully prepared from an aqueous electrolyte bath containing CdCl2 and ammonium thiosulphate ((NH4)2S2O3) using electrodeposition technique. The structural, compositional, optical, morphological and electrical properties of these thin films have been characterized using X-ray diffraction (XRD), Raman spectroscopy, energy dispersive X-ray spectroscopy, UV–Vis spectrophotometry, scanning electron microscopy (SEM), atomic force microscopy (AFM), photoelectrochemical cell and D.C. current–voltage (I–V) measurements. The optimum deposition cathodic potential has been observed at 1,455 mV, in a 2-electrode system with respect to carbon anode. Structural analysis using XRD shows a mixture of hexagonal and cubic phases in the as-deposited CdS samples and a phase transformation to the hexagonal structure occurred after heat treatment at 400 °C for 20 min. Optical studies demonstrate an improvement in the band edge, producing 2.42 eV for the band gap of the films after heat treatment. The heat treated CdS thin films show better transmission for wavelengths longer than 500 nm. SEM and AFM show that the heat-treated samples are more uniform, smoother and have larger grain size. Electrical studies confirm that the CdS thin films have n-type electrical conductivity and heat treated CdS thin films have resistivities of the order of 105 Ω cm