Single crystal elasticity of majoritic garnets: Stagnant slabs and thermal anomalies at the base of the transition zone

The elastic properties of two single crystals of majoritic garnet (Mg3.24Al1.53Si3.23O12 and Mg3.01Fe0.17Al1.68Si3.15O12), have been measured using simultaneously single-crystal X-ray diffraction and Brillouin spectroscopy in an externally heated diamond anvil cell with Ne as pressure transmitting medium at conditions up to ∼30 GPa and ∼600 K. This combination of techniques makes it possible to use the bulk modulus and unit-cell volume at each condition to calculate the absolute pressure, independently of secondary pressure calibrants. Substitution of the majorite component into pyrope garnet lowers both the bulk (Ks) and shear modulus (G). The substitution of Fe was found to cause a small but resolvable increase in Ks that was accompanied by a decrease in ∂Ks/∂P, the first pressure derivative of the bulk modulus. Fe substitution had no influence on either the shear modulus or its pressure derivative. The obtained elasticity data were used to derive a thermo-elastic model to describe Vs and Vp of complex garnet solid solutions. Using further elasticity data from the literature and thermodynamic models for mantle phase relations, velocities for mafic, harzburgitic and lherzolitic bulk compositions at the base of Earth's transition zone were calculated. The results show that Vs predicted by seismic reference models are faster than those calculated for all three types of lithologies along a typical mantle adiabat within the bottom 150 km of the transition zone. The anomalously fast seismic shear velocities might be explained if laterally extensive sections of subducted harzburgite-rich slabs pile up at the base of the transition zone and lower average mantle temperatures within this depth range

Single-crystal elasticity of majoritic garnets: stagnant slabs and thermal anomalies at the base of the transition zone

The elastic properties of two single crystals of majoritic garnet (Mg3.24Al1.53Si3.23O12 and Mg3.01Fe0.17Al1.68Si3.15O12), have been measured using simultaneously single-crystal X-ray diffraction and Brillouin spectroscopy in an externally heated diamond anvil cell with Ne as pressure transmitting medium at conditions up to 3c30 GPa and 3c600 K. This combination of techniques makes it possible to use the bulk modulus and unit-cell volume at each condition to calculate the absolute pressure, independently of secondary pressure calibrants. Substitution of the majorite component into pyrope garnet lowers both the bulk (Ks) and shear modulus (G). The substitution of Fe was found to cause a small but resolvable increase in Ks that was accompanied by a decrease in 02Ks/ 02P, the first pressure derivative of the bulk modulus. Fe substitution had no influence on either the shear modulus or its pressure derivative. The obtained elasticity data were used to derive a thermo-elastic model to describe Vs and Vp of complex garnet solid solutions. Using further elasticity data from the literature and thermodynamic models for mantle phase relations, velocities for mafic, harzburgitic and lherzolitic bulk compositions at the base of Earth's transition zone were calculated. The results show that Vs predicted by seismic reference models are faster than those calculated for all three types of lithologies along a typical mantle adiabat within the bottom 150 km of the transition zone. The anomalously fast seismic shear velocities might be explained if laterally extensive sections of subducted harzburgite-rich slabs pile up at the base of the transition zone and lower average mantle temperatures within this depth range

Low-oxygen waters limited habitable space for early animals

The oceans at the start of the Neoproterozoic Era (1,000–541 million years ago, Ma) were dominantly anoxic, but may have become progressively oxygenated, coincident with the rise of animal life. However, the control that oxygen exerted on the development of early animal ecosystems remains unclear, as previous research has focussed on the identification of fully anoxic or oxic conditions, rather than intermediate redox levels. Here we report anomalous cerium enrichments preserved in carbonate rocks across bathymetric basin transects from nine localities of the Nama Group, Namibia (~550–541 Ma). In combination with Fe-based redox proxies, these data suggest that low-oxygen conditions occurred in a narrow zone between well-oxygenated surface waters and fully anoxic deep waters. Although abundant in well-oxygenated environments, early skeletal animals did not occupy oxygen impoverished regions of the shelf, demonstrating that oxygen availability (probably >10 μM) was a key requirement for the development of early animal-based ecosystems

Interrogating Regulatory Mechanisms in Signaling Proteins by Allosteric Inhibitors and Activators: A Dynamic View Through the Lens of Residue Interaction Networks

Computational studies of allosteric interactions have witnessed a recent renaissance fueled by the growing interest in modeling of the complex molecular assemblies and biological networks. Allosteric interactions in protein structures allow for molecular communication in signal transduction networks. In this chapter, we discuss recent developments in understanding of allosteric mechanisms and interactions of protein systems, particularly in the context of structural, functional, and computational studies of allosteric inhibitors and activators. Computational and experimental approaches and advances in understanding allosteric regulatory mechanisms are reviewed to provide a systematic and critical view of the current progress in the development of allosteric modulators and highlight most challenging questions in the field. The abundance and diversity of genetic, structural, and biochemical data underlies the complexity of mechanisms by which targeted and personalized drugs can combat mutational profiles in protein kinases. Structural and computational studies of protein kinases have generated in recent decade significant insights that allowed leveraging knowledge about conformational diversity and allosteric regulation of protein kinases in the design and discovery of novel kinase drugs. We discuss recent developments in understanding multilayered allosteric regulatory machinery of protein kinases and provide a systematic view of the current state in understanding molecular basis of allostery mediated by kinase inhibitors and activators. In conclusion, we highlight the current status and future prospects of computational biology approaches in bridging the basic science of protein kinases with the discovery of anticancer therapies.https://digitalcommons.chapman.edu/scs_books/1049/thumbnail.jp