Genome-wide identification, functional analysis and expression profiling of pleiotropic drug resistance (PDR) sub-family in potato

The plant pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters has comprehensively been researched in relation to transport of antifungal agents and resistant pathogens. In our study, analyses of the whole family of PDR genes present in the potato genome were provided. This analysis resolves discrepancies of potato PDR proteins and provides an expression analysis of all annotated potato PDR genes based on RNA-seq data. The results indicate that the potato genome contains 76 encoding PDR proteins and that these genes show a specific expression patterns, both at the organ level and in response to various hormonal treatment. These data provide some clues for future molecular genetic analysis of this important subfamily of ABC transporters. In addition, potato PDR genes may also play some important roles in the transportation of antifungal agents and resistant pathogens.Keywords: ABC transporter, potato, pleiotropic drug resistance (PDR), RNA-seq.African Journal of Biotechnology Vol. 12(30), pp. 4722-472

Familial multinodular goiter syndrome with papillary thyroid carcinomas: mutational analysis of the associated genes in 5 cases from 1 Chinese family

Background: Familial papillary thyroid cancer (fPTC) is recognized as a distinct entity only recently and no fPTC predisposing genes have been identified. Several potential regions and susceptibility loci for sporadic PTC have been reported. We aimed to evaluate the role of the reported susceptibility loci and potential risk genomic region in a Chinese familial multinodular goiter (fMNG) with PTC family. Methods: We sequenced the related risk genomic regions and analyzed the known PTC susceptibility loci in the Chinese family members who consented to join the study. These loci included (1) the point mutations of the BRAF and RET; (2) the possible susceptibility loci to sporadic PTC; and (3) the suggested potential fMNG syndrome with PTC risk region. Results: The members showed no mutations in the common susceptible BRAF and RET genomic region, although contained several different heterozygous alleles in the RET introns. All the members were homozygous for PTC risk alleles of rs966423 (C) at chromosome 2q35, rs2910164 (C) at chromosome 5q24 and rs2439302 (G) at chromosome 8p12; while carried no risk allele of rs4733616 (T) at chromosome 8q24, rs965513 (A) or rs1867277 (A) at chromosome 9q22 which were associated with radiation-related PTC. The frequency of the risk allele of rs944289 (T) but not that of rs116909374 (T) at chromosome 14q13 was increased in the MNG or PTC family members. Conclusions: Our work provided additional evidence to the genetic predisposition to a Chinese familial form of MNG with PTC. The family members carried quite a few risk alleles found in sporadic PTC; particularly, homozygous rs944289 (T) at chromosome 14q13 which was previously shown to be linked to a form of fMNG with PTC. Moreover, the genetic determinants of radiation-related PTC were not presented in this family

Container CT scanner: a solution for modular emergency radiology department during the COVID-19 pandemic

During the coronavirus disease 2019 (COVID-19) pandemic period, container computed tomography (CT) scanners were developed and used for the first time in China to perform CT examinations for patients with clinically mild to moderate COVID-19 who did not need to be hospitalized for comprehensive treatment, but needed to be isolated in Fangcang shelter hospitals (also known as makeshift hospitals) to receive some supportive treatment. The container CT is a multidetector CT scanner installed within a radiation-protected stand-alone container (a detachable lead shielding room) that is deployed outside the makeshift hospital buildings. The container CT approach provided various medical institutions with the solution not only for rapid CT installation and high adaptability to site environments, but also for significantly minimizing the risk of cross-infection between radiological personnel and patients during CT examination in the pandemic. In this article, we described the typical setup of a container CT and how it worked for chest CT examinations in Wuhan city, the epicenter of COVID-19 outbreak

Fast Detection of the Emetic Toxin Cereulide in Cooked Rice and Dairy Products by Matrix-Assisted Laser Desorption/Ionization Time of Flight Mass Spectrometry

A matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF-MS) method was developed for the rapid detection of the emetic toxin cereulide in cooked rice and dairy products. The splitting pattern of cereulide standard was analyzed, meanwhile, effects of matrix type, spotting methods, the type and dosage of matrix solvent, and laser intensity on the MS signal intensity of cereulide were investigated. Methodological validation and application to actual samples were conducted. As a result, α-cyano-4-hydroxycinnamic acid (HCCA) was chosen as the matrix and dispersed in a 1:1 acetonitrile-water mixture containing 0.1% trifluoroacetic acid, and the matrix and the samples were sequentially spotted. In MALDI-TOF MS screening of foods using positive ion reflectron and linear modes at 70% laser intensity, the target ion peaks of ([M + Na]+ and [M + K]+) in cereulide were detected with stable signals, high intensity and good response repeatability. The results of methodological validation showed that good linear relationship was observed between the overlapping areas of [M + Na]+ and [M + K]+ peaks and cereulide concentration in the range from 5 to 100 ng/mL, with a correlation coefficients (r) greater than 0.99. The limits of detection (LOD) of [M + Na]+ and [M + K]+ were 3.0 and 5.0 ng/g, respectively; the recoveries of spiked rice and milk samples were ranged from 73.3% to 118.2%, with relative standard deviations (RSDs) of 0.3% to 10.9% (n = 6). This method was characterized by rapidity, high accuracy, good sensitivity, and strong anti-interference ability, and was suitable for the detection of cereulide in cooked rice and dairy products without using any internal standard

Periodic elastic nanodomains in ultrathin tetrogonal-like BiFeO3 films

We present a synchrotron grazing incidence x-ray diffraction analysis of the domain structure and polar symmetry of highly strained BiFeO3 thin films grown on LaAlO3 substrate. We revealed the existence of periodic elastic nanodomains in the pure tetragonal-like BFO ultrathin films down to a thickness of 6 nm. A unique shear strain accommodation mechanism is disclosed. We further demonstrated that the periodicity of the nanodomains increases with film thickness but deviates from the classical Kittel's square root law in ultrathin thickness regime (6 - 30 nm). Temperature-dependent experiments also reveal the disappearance of periodic modulation above 90C due to a MC-MA structural phase transition.Comment: Accepted in Phys. Rev.

Aberrant hepatic trafficking of gut-derived T cells is not specific to primary sclerosing cholangitis

Background and Aims The “gut homing” hypothesis suggests the pathogenesis of primary sclerosing cholangitis (PSC) is driven by aberrant hepatic expression of gut adhesion molecules and subsequent recruitment of gut‐derived T cells to the liver. However, inconsistencies lie within this theory including an absence of investigations and comparisons with other chronic liver diseases (CLD). Here, we examine “the gut homing theory” in patients with PSC with associated inflammatory bowel disease (PSC‐IBD) and across multiple inflammatory liver diseases. Approach and Results Expression of MAdCAM‐1, CCL25, and E‐Cadherin were assessed histologically and using RT‐PCR on explanted liver tissue from patients with CLD undergoing OLT and in normal liver. Liver mononuclear cells were isolated from explanted tissue samples and the expression of gut homing integrins and cytokines on hepatic infiltrating gut‐derived T cells was assessed using flow cytometry. Hepatic expression of MAdCAM‐1, CCL25 and E‐Cadherin was up‐regulated in all CLDs compared with normal liver. There were no differences between disease groups. Frequencies of α4β7, αEβ7, CCR9, and GPR15 expressing hepatic T cells was increased in PSC‐IBD, but also in CLD controls, compared with normal liver. β7 expressing hepatic T cells displayed an increased inflammatory phenotype compared with β7 negative cells, although this inflammatory cytokine profile was present in both the inflamed and normal liver. Conclusions These findings refute the widely accepted “gut homing” hypothesis as the primary driver of PSC and indicate that aberrant hepatic recruitment of gut‐derived T cells is not unique to PSC, but is a panetiological feature of CLD