Landscape woody features, local management and vegetation composition shape moth communities in extensively managed grasslands

1. Agricultural intensification has led to a dramatic impoverishment of biodiversity. Moths are not an exception: rapid declines of common and widespread species have been reported and it is still not clear which conservation measures should be applied to restore their populations. 2. We investigated how much of the variation in moth assemblages inhabiting extensively managed meadows in a region of high-intensity agriculture is explained by surrounding woody landscape features, meadow management and vegetation composition, and which specific variables are the most influential. 3. Results show that the percentage of forest and the length of hedgerows within a 250 m radius were especially important for forest macromoths, explaining 42% of variation in abundance and 23% of species richness, whereas meadow management played a relatively marginal role. The abundance of grassland macromoths was also positively influenced by the length of hedgerows in the landscape (combined with elevation it explained 10% of the variance), while it responded negatively to uncut refuge and to delayed mowing (7%). Regarding grassland macromoth species richness, the annual harvesting frequency was the main predictor (4%). In contrast, micromoth abundance was more influenced by meadow management, notably the date of the first cut (4%) and vegetation composition (8%, though not conclusive due to a single outlier), whereas landscape features explained nothing. 4. Altogether, these results demonstrate the importance of both woody features within farmed landscapes and biodiversity-friendly meadow management for the maintenance of integral moth communities

Grassland intensification dramatically impacts grasshoppers: Experimental evidence for direct and indirect effects of fertilisation and irrigation

European mountain hay meadows are hosting an exceptionally rich biodiversity. They are currently threatened by both land abandonment and farming intensification via aerial irrigation and slurry application. The consequences of mountain grassland intensification on arthropods are still poorly documented, which is a serious handicap to proposing ecologically-friendly management guidance. Six experimental treatments mimicking a gradient of management intensity (including irrigation, fertilisation and various combinations thereof) were initiated in 2010 at twelve montane and subalpine Swiss meadow sites. In 2013, we sampled orthopterans to assess the influence of management practice on that taxonomic group. In parallel, the changes in vegetation height and ambient temperature (at 10 cm above ground level) induced by the intensification process were quantified in order to better appraise the underlying mechanisms. Intensification had a negative impact on Caelifera (grasshoppers), with decreases in densities and species richness reaching as much as 70% and 50%, respectively, in the most intensively managed treatment plots. Intensification furthermore led to a marked increase in mean vegetation height and a cooling of ambient temperature by up to 4.2 ◦C. Such microhabitat and microclimate alterations are likely to affect Caelifera development, in particular thermophilous species. In contrast, Ensifera (bushcrickets) densities and species richness showed no significant response to our experimental manipulations. Finally, the application of irrigation by sprinklers alone had limited impact on both orthopterans and meadow microclimate. We conclude that orthopterans, in particular Caelifera, are fairly sensitive to grassland management intensification: fertilisation should be avoided in focal areas for biodiversity conservation

Transfer of invertebrates with hay during restoration operations of extensively managed grasslands in Switzerland

Introduction Hay transfer from a speciose donor meadow to a species-poor receiver grassland is an established method to restore species-rich grassland plant communities. However, it has rarely been investigated to which extent invertebrates can be transferred with hay during such operations, which was the aim of this study. Methods Sampling was conducted in eight sites of the Swiss lowlands with one donor meadow and two receiver sites each. On the receiver sites, three to four white bed sheets of one square meter each were deployed on the ground to receive a standard quantity of fresh hay just transferred from the donor meadow. All living invertebrates were collected from these sheets with an aspirator and subsequently identified to order level. Results On average (± SD), 9.2 ± 11.3 living invertebrates per square meter were transferred with the hay. Beetles were the most abundant species group, representing 46.9% of all transferred invertebrates, followed by true bugs (8.9%) and spiders (7.0%). More individuals were transferred when the donor meadow was mown with a hand motor bar mower than with a rotary disc mower. Similarly, more invertebrates were transferred when the hay was transported loosely with a forage wagon than compacted as bales. Discussion While this study demonstrates that living invertebrates can be transferred with the hay, their subsequent survival and establishment remains to be explored. Implications for insect conservation We recommend using a hand motor bar mower and a forage wagon for increasing the survival probability of invertebrates in hay transfer

Life cycle assessment of two baby food packaging alternatives: glass jars vs. plastic pots

Background, aim, and scope: This paper compares the life cycle assessment (LCA) of two packaging alternatives used for baby food produced by Nestlé: plastic pot and glass jar. The study considers the environmental impacts associated with packaging systems used to provide one baby food meal in France, Spain, and Germany in 2007. In addition, alternate logistical scenarios are considered which are independent of the two packaging options. The 200-g packaging size is selected as the basis for this study. Two other packaging sizes are assessed in the sensitivity analysis. Because results are intended to be disclosed to the public, this study underwent a critical review by an external panel of LCA experts. Materials and methods: The LCA is performed in accordance to the international standards ISO 14040 and ISO 14044. The packaging systems include the packaging production, the product assembly, the preservation process, the distribution, and the packaging end-of-life. The production of the content (before preservation process), as well as the use phase are not taken into account as they are considered not to change when changing packaging. The inventory is based on data obtained from the baby food producer and the suppliers, data from the scientific literature, and data from the ecoinvent database. Special care is taken to implement a system expansion approach for end-of-life open and closed loop recycling and energy production (ISO 14044). A comprehensive impact assessment is performed using two life cycle impact assessment methodologies: IMPACT 2002+ and CML 2001. An extensive uncertainty analysis using Monte Carlo as well as an extensive sensitivity study are performed on the inventory and the reference flows, respectively. Results: When looking at the impacts due to preservation process and packaging (considering identical distribution distances), we observe a small but significant environmental benefit of the plastic pot system over the glass jar system. Depending on the country, the impact is reduced by 14% to 27% for primary energy, 28% to 31% for global warming, 31% to 34% for respiratory inorganics, and 28% to 31% for terrestrial acidification/nutrification. The environmental benefit associated with the change in packaging mainly results from (a) production of plastic pot (including its end-of-life; 43% to 51% of total benefit), (b) lighter weight of packaging positively impacting transportation (20% to 35% of total benefit), and (c) new preservation process permitted by the plastic system (23% to 34% of total benefit). The jar or pot (including cap or lid, cluster, stretch film, and label) represents approximately half of the life cycle impacts, the logistics approximately one fourth, and the rest (especially on-site energy, tray, and hood) one fourth. Discussion: The sensitivity analysis shows that assumptions made in the basic scenarios are rather conservative for plastic pots and that the conclusions for the 200-g packaging size also apply to other packaging sizes. The uncertainty analysis performed on the inventory for the German market situation shows that the plastic pot system has less impact than the glass jar system while considering similar distribution distances with a confidence level above 97% for most impact categories. There is opportunity for further improvement independent of the type of packaging used, such as by reducing distribution distances while still optimizing lot size. The validity of the main conclusions presented in this study is confirmed by results of both impact assessment methodologies IMPACT 2002+ and CML 2001. Conclusions: For identical transportation distances, the plastic pot system shows a small but significant reduction in environmental burden compared to the glass jar system. Recommendations and perspectives: As food distribution plays an important role in the overall life cycle burdens and may vary between scenarios, it is important to avoid additional transportation of the packaged food in order to maintain or even improve the advantage of the plastic pot system. The present study focuses on the comparison of packaging systems and directly related consequences. It is recommended that further environmental optimization of the product also includes food manufacturing (before preservation process) and the supply chain of raw material

The HIV-1 nucleocapsid chaperone protein forms locally compacted globules on long double-stranded DNA

The nucleocapsid (NC) protein plays key roles in Human Immunodeficiency Virus 1 (HIV-1) replication, notably by condensing and protecting the viral RNA genome and by chaperoning its reverse transcription into double-stranded DNA (dsDNA). Recent findings suggest that integration of viral dsDNA into the host genome, and hence productive infection, is linked to a small subpopulation of viral complexes where reverse transcription was completed within the intact capsid. Therefore, the synthesized dsDNA has to be tightly compacted, most likely by NC, to prevent breaking of the capsid in these complexes. To investigate NC\u27s ability to compact viral dsDNA, we here characterize the compaction of single dsDNA molecules under unsaturated NC binding conditions using nanofluidic channels. Compaction is shown to result from accumulation of NC at one or few compaction sites, which leads to small dsDNA condensates. NC preferentially initiates compaction at flexible regions along the dsDNA, such as AT-rich regions and DNA ends. Upon further NC binding, these condensates develop into a globular state containing the whole dsDNA molecule. These findings support NC\u27s role in viral dsDNA compaction within the mature HIV-1 capsid and suggest a possible scenario for the gradual dsDNA decondensation upon capsid uncoating and NC loss

Benfluorex and Unexplained Valvular Heart Disease: A Case-Control Study

BACKGROUND: Recent case reports suggest that benfluorex, a fenfluramine derivative used in the management of overweight diabetic patients and dyslipidemia, is associated with cardiac valve regurgitation. METHODS: We conducted a case-control study. Eligible patients were those admitted in the cardiology or the cardiac surgery units of our hospital between January, 1(st) 2003 and June 30(th) 2009, with mitral insufficiency diagnostic codes (ICD-10 I340 and I051). Patients with either a primary cause (degenerative, known rheumatic heart disease, infectious endocarditis, congenital, radiation-induced valvular disease, associated connective and/or vasculitis disease, trauma, tumor) or a secondary (functional) cause were considered as having an "explained" mitral regurgitation. Other patients were considered as having an "unexplained" mitral regurgitation and were included as cases. For each case, two controls were matched for gender and for the closest date of birth, among a list of patients with an "explained" mitral regurgitation. Drug exposures were assessed blindly regarding the case or control status, through contacts with patients, their family and/or their physicians. RESULTS: Out of the 682 eligible patients, 27 cases and 54 matched controls were identified. The use of benfluorex was reported in 22 patients: 19 of the 27 cases, versus 3 of the 54 controls, odds-ratio 17.1 (3.5 to 83), adjusted for body mass index, diabetes and dexfenfluramine use. CONCLUSION: The use of benfluorex is associated with unexplained mitral regurgitation

Identification of Mimotopes with Diagnostic Potential for Trypanosoma brucei gambiense Variant Surface Glycoproteins Using Human Antibody Fractions

Background: At present, screening of the population at risk for gambiense human African trypanosomiasis (HAT) is based on detection of antibodies against native variant surface glycoproteins (VSGs) of Trypanosoma brucei (T.b.) gambiense. Drawbacks of these native VSGs include culture of infective T.b. gambiense trypanosomes in laboratory rodents, necessary for production, and the exposure of non-specific epitopes that may cause cross-reactions. We therefore aimed at identifying peptides that mimic epitopes, hence called “mimotopes,” specific to T.b. gambiense VSGs and that may replace the native proteins in antibody detection tests. Methodology/Principal Findings A Ph.D.-12 peptide phage display library was screened with polyclonal antibodies from patient sera, previously affinity purified on VSG LiTat 1.3 or LiTat 1.5. The peptide sequences were derived from the DNA sequence of the selected phages and synthesised as biotinylated peptides. Respectively, eighteen and twenty different mimotopes were identified for VSG LiTat 1.3 and LiTat 1.5, of which six and five were retained for assessment of their diagnostic performance. Based on alignment of the peptide sequences on the original protein sequence of VSG LiTat 1.3 and 1.5, three additional peptides were synthesised. We evaluated the diagnostic performance of the synthetic peptides in indirect ELISA with 102 sera from HAT patients and 102 endemic negative controls. All mimotopes had areas under the curve (AUCs) of ≥0.85, indicating their diagnostic potential. One peptide corresponding to the VSG LiTat 1.3 protein sequence also had an AUC of ≥0.85, while the peptide based on the sequence of VSG LiTat 1.5 had an AUC of only 0.79. Conclusions/Significance: We delivered the proof of principle that mimotopes for T.b. gambiense VSGs, with diagnostic potential, can be selected by phage display using polyclonal human antibodies

Annealing of ssDNA and compaction of dsDNA by the HIV-1 nucleocapsid and Gag proteins visualized using nanofluidic channels

The nucleocapsid protein NC is a crucial component in the human immunodeficiency virus type 1 life cycle. It functions both in its processed mature form and as part of the polyprotein Gag that plays a key role in the formation of new viruses. NC can protect nucleic acids (NAs) from degradation by compacting them to a dense coil. Moreover, through its NA chaperone activity, NC can also promote the most stable conformation of NAs. Here, we explore the balance between these activities for NC and Gag by confining DNA-protein complexes in nanochannels. The chaperone activity is visualized as concatemerization and circularization of long DNA via annealing of short single-stranded DNA overhangs. The first ten amino acids of NC are important for the chaperone activity that is almost completely absent for Gag. Gag condenses DNA more efficiently than mature NC, suggesting that additional residues of Gag are involved. Importantly, this is the first single DNA molecule study of full-length Gag and we reveal important differences to the truncated Δ-p6 Gag that has been used before. In addition, the study also highlights how nanochannels can be used to study reactions on ends of long single DNA molecules, which is not trivial with competing single DNA molecule techniques