Orbital Variations of Biogenic CaCO3 and Opal Abundance in the Western and Central Equatorial Pacific Ocean During the Late Quaternary

Biogenic CaCO3 and opal abundances were measured in two piston cores (PC313 and PC5101) collected, respectively, along the equator in the western and central Pacific Ocean. The age model for core PC313, which extends to about 750 ka, was developed by comparing the oxygen isotope stratigraphy of planktonic foraminifera (N. dutetrei) to the SPECMAP stack. The age model for core PC5101, which extends to about 600 ka, was developed by stratigraphic correlation of CaCO3 contents to those in the well-dated core RC11-210 (Chuey et al. 1987). Both cores distinctly exhibited a series of CaCO3 and opal variations, which are mainly controlled by the orbital eccentricity cycle of about 100-kyr. The orbital-scale cyclic variations of CaCO3 and opal contents appear to be contrasting in both cores such that high CaCO3 and low opal contents occurred during the glacial periods. In contrast, during the interglacial periods, low CaCO3 and high opal contents occurred. Mostly remarkable is the distinct occurrence of a mid-Bruhnes event (MBE) at around 350 ka. The CaCO3 content was higher in core PC5101 than in core PC313 before the MBE, whereas biogenic opal abundance became higher in core PC5101 after the MBE. Such a characteristic discrepancy of biogenic (CaCO3 and opal) production, i.e., a succession of primary producers from coccolithophore to diatom, between cores PC313 and PC5101 may be attributed to the prevailing dominant hydrographic conditions (i.e., the South Equatorial Current), in the path of which both cores are located. The intensity of westward propagation might have been an important factor in contrasting biogenic production centering around the MBE

Biogenic CaCO3 and Opal Depositions and Their Latitudinal Comparison During the Past 600 ka in the Central Equatorial Pacific

The orbital-scale variations in biogenic CaCO3 and opal abundance in two piston cores collected in the central equatorial Pacific (core PC5101 from a southern site at _ and core PC5103 from a northern site at _ were compared to assess latitudinal differences. The correlation between the oxygen isotope stratigraphy of planktonic foraminifera (Globigerinoides sacculifer) of PC5103 with the LR04 stacks provides the age of PC5103 to be approximately 950 ka. The age of PC5103 was further refined by correlating the CaCO3 content with the well-dated core RC11-210. The age of PC5101 was also constrained by the same CaCO3 chronostratigraphic correlation with RC11-210, resulting in an age of approximately 650 ka. Distinct orbital-scale series of CaCO3 and opal variations appear to be parallel between the two cores during the past 600 ka, which are controlled mainly by eccentricity with an approximate periodicity of 100 ka. It is worth noting that the biogenic CaCO3 and opal deposition patterns in the two cores differ between interglacial and glacial periods. During interglacial periods the biogenic opal content is higher in the southern core than in the northern core, which corresponds with the present-day condition. In contrast the CaCO3 content is higher in the northern core, which is contradictory to the present-day northward decreasing CaCO3 deposition pattern from the Equator. The collection site of PC5101 is approximately 350 m deeper than that of PC5103, which significantly promotes CaCO3 dissolution and causes unexpectedly high CaCO3 content at the northern site in contrast to the biogenic opal content

A simple and accurate SNP scoring strategy based on typeIIS restriction endonuclease cleavage and matrix-assisted laser desorption/ionization mass spectrometry

<p>Abstract</p> <p>Background</p> <p>We describe the development of a novel matrix-assisted laser desorption ionization time-of-flight (MALDI-TOF)-based single nucleotide polymorphism (SNP) scoring strategy, termed Restriction Fragment Mass Polymorphism (RFMP) that is suitable for genotyping variations in a simple, accurate, and high-throughput manner. The assay is based on polymerase chain reaction (PCR) amplification and mass measurement of oligonucleotides containing a polymorphic base, to which a typeIIS restriction endonuclease recognition was introduced by PCR amplification. Enzymatic cleavage of the products leads to excision of oligonucleotide fragments representing base variation of the polymorphic site whose masses were determined by MALDI-TOF MS.</p> <p>Results</p> <p>The assay represents an improvement over previous methods because it relies on the direct mass determination of PCR products rather than on an indirect analysis, where a base-extended or fluorescent report tag is interpreted. The RFMP strategy is simple and straightforward, requiring one restriction digestion reaction following target amplification in a single vessel. With this technology, genotypes are generated with a high call rate (99.6%) and high accuracy (99.8%) as determined by independent sequencing.</p> <p>Conclusion</p> <p>The simplicity, accuracy and amenability to high-throughput screening analysis should make the RFMP assay suitable for large-scale genotype association study as well as clinical genotyping in laboratories.</p

Post-traumatic Back Pain Revealed as Tuberculous Spondylitis -A Case Report-

Tuberculous spondylitis is a very rare disease, but it can result in bone destruction, kyphotic deformity, spinal instability, and neurologic complications unless early diagnosis and proper management are done. Because the most common symptom of tuberculous spondylitis is back pain, it can often be misdiagnosed. Atypical tuberculous spondylitis can be presented as a metastatic cancer or a primary vertebral tumor. We must make a differential diagnosis through adequate biopsy. A 30-year-old man visited our clinic due to back and chest pain after a recent traffic accident. About 1 year ago, he had successfully recovered from tuberculous pleurisy after taking anti-tuberculosis medication. We performed epidural and intercostal blocks but the pain was not relieved. For the further evaluation, several imaging and laboratory tests were done. Finally, we confirmed tuberculous spondylitis diagnosis with the biopsy results

Molecular Analysis of X-linked Chronic Granulomatous Disease in Five Unrelated Korean Patients

Chronic granulomatous disease (CGD) is a fatal genetic disorder in which phagocytes fail to produce antimicrobial superoxide because of NADPH oxidase deficiency. Molecular defects in CYBB gene causing X-linked CGD are responsible for about 70% of all cases. This study was done to confirm genetic defects of CYBB gene in five Korean patients who were highly suggestive of having CGD by clinical history. We performed initial screening for five unrelated Korean patients using single strand conformation polymorphism (SSCP) and then selective sequencing for the regions involving the abnormal bands. Activated NBT tests revealed that all patients were X-linked. SSCP analysis for CYBB gene showed abnormal bands in all patients. The molecular defects of five patients were as follows: c.1663insT, c.1111-1G>T, c.39_40insG, c.927delC and c.434T>C mutation. This result will help the families with prenatal diagnosis or genetic counseling