APETALA2 antagonizes the transcriptional activity of AGAMOUS in regulating floral stem cells in Arabidopsis thaliana.

APETALA2 (AP2) is best known for its function in the outer two floral whorls, where it specifies the identities of sepals and petals by restricting the expression of AGAMOUS (AG) to the inner two whorls in Arabidopsis thaliana. Here, we describe a role of AP2 in promoting the maintenance of floral stem cell fate, not by repressing AG transcription, but by antagonizing AG activity in the center of the flower. We performed a genetic screen with ag-10 plants, which exhibit a weak floral determinacy defect, and isolated a mutant with a strong floral determinacy defect. This mutant was found to harbor another mutation in AG and was named ag-11. We performed a genetic screen in the ag-11 background to isolate mutations that suppress the floral determinacy defect. Two suppressor mutants were found to harbor mutations in AP2. While AG is known to shut down the expression of the stem cell maintenance gene WUSCHEL (WUS) to terminate floral stem cell fate, AP2 promotes the expression of WUS. AP2 does not repress the transcription of AG in the inner two whorls, but instead counteracts AG activity

Structural and biochemical insights into small RNA 3' end trimming by Arabidopsis SDN1.

A family of DEDDh 3'→5' exonucleases known as Small RNA Degrading Nucleases (SDNs) initiates the turnover of ARGONAUTE1 (AGO1)-bound microRNAs in Arabidopsis by trimming their 3' ends. Here, we report the crystal structure of Arabidopsis SDN1 (residues 2-300) in complex with a 9 nucleotide single-stranded RNA substrate, revealing that the DEDDh domain forms rigid interactions with the N-terminal domain and binds 4 nucleotides from the 3' end of the RNA via its catalytic pocket. Structural and biochemical results suggest that the SDN1 C-terminal domain adopts an RNA Recognition Motif (RRM) fold and is critical for substrate binding and enzymatic processivity of SDN1. In addition, SDN1 interacts with the AGO1 PAZ domain in an RNA-independent manner in vitro, enabling it to act on AGO1-bound microRNAs. These extensive structural and biochemical studies may shed light on a common 3' end trimming mechanism for 3'→5' exonucleases in the metabolism of small non-coding RNAs

An ABC Algorithm with Recombination

Artificial bee colony (ABC) is an efficient swarm intelligence algorithm, which has shown good exploration ability. However, its exploitation capacity needs to be improved. In this paper, a novel ABC variant with recombination (called RABC) is proposed to enhance the exploitation. RABC firstly employs a new search model inspired by the updating equation of particle swarm optimization (PSO). Then, both the new search model and the original ABC model are recombined to build a hybrid search model. The effectiveness of the proposed RABC is validated on ten famous benchmark optimization problems. Experimental results show RABC can significantly improve the quality of solutions and accelerate the convergence speed

Arabidopsis AAR2, a conserved splicing factor in eukaryotes, acts in microRNA biogenesis

MicroRNAs (miRNAs) play an essential role in plant growth and development, and as such, their biogenesis is fine-tuned via regulation of the core microprocessor components. Here, we report that Arabidopsis AAR2, a homolog of a U5 snRNP assembly factor in yeast and humans, not only acts in splicing but also promotes miRNA biogenesis. AAR2 interacts with the microprocessor component hyponastic leaves 1 (HYL1) in the cytoplasm, nucleus, and dicing bodies. In aar2 mutants, abundance of nonphosphorylated HYL1, the active form of HYL1, and the number of HYL1-labeled dicing bodies are reduced. Primary miRNA (pri-miRNA) accumulation is compromised despite normal promoter activities of MIR genes in aar2 mutants. RNA decay assays show that the aar2-1 mutation leads to faster degradation of pri-miRNAs in a HYL1-dependent manner, which reveals a previously unknown and negative role of HYL1 in miRNA biogenesis. Taken together, our findings reveal a dual role of AAR2 in miRNA biogenesis and pre-messenger RNA splicing.Fil: Fan, Lusheng. University of California; Estados UnidosFil: Gao, Bin. University of California; Estados UnidosFil: Xu, Ye. University of California; Estados UnidosFil: Flynn, Nora. University of California; Estados UnidosFil: Le, Brandon. University of California; Estados UnidosFil: You, Chenjiang. Fudan University; ChinaFil: Li, Shaofang. Fudan University; ChinaFil: Achkar, Natalia Patricia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe. Instituto de Agrobiotecnología del Litoral. Universidad Nacional del Litoral. Instituto de Agrobiotecnología del Litoral; ArgentinaFil: Manavella, Pablo Andrés. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe. Instituto de Agrobiotecnología del Litoral. Universidad Nacional del Litoral. Instituto de Agrobiotecnología del Litoral; ArgentinaFil: Yang, Zhenbiao. University of California; Estados UnidosFil: Chen, Xuemei. University of California; Estados Unido

Characteristics of Tibetan medicine preparations used in the Chinese-Tibetan Hospital of Derong County

Purpose: To investigate the Tibetan medicine preparations used in Derong Chinese-Tibetan Hospital. Methods: In this study, 115 preparations were collected from the Chinese-Tibetan Hospital of Derong County. A statistical table of information on medicine preparation was prepared in Excel format, and it included information on the forms of preparations, medicinal materials, medicinal parts used, frequency of use, and clinical applications. Results: The 115 preparations were mainly pills. In clinics, they were used for treating liver disease, stomach-ache, gastric ulcer, nephrotic pain and fever. It was found that 226 medicines were used in various preparations. The plant components used varied from whole herbs, fruits, seeds, roots, rhizomes, and animal-based medicines, to flowers. The most frequently used plants/herbs were Terminalia chebula Retz., Carthamus tinctorius L., Aucklandia lappa Decne., Alpinia katsumadai Hayata and Phyllanthus emblica L. The most commonly used drug combinations involved three fruits (Terminalia chebula Retz., Terminalia billerica (Gaertn.) Roxb and Phyllanthus emblica L.). The preparations and medicinal materials used for liver and stomach diseases are described in detail in this article. These include Terminalia chebula Retz., Aucklandia lappa Decne. and Carthamus tinctorius L. Conclusion: The study has analysed the characteristics and clinical uses of Tibetan medicine preparations and summarised the diseases and medicinal materials in the Tibetan area. These preparations and medicinal materials, with their many years of clinical use, may become invaluable gifts of Tibetan medicine to the world

Cloning, Characterization, and Functional Expression of Phospholipase D α

Phospholipase D (PLD) plays a key role in adaptive responses of postharvest fruits. A cDNA clone of banana (Musa acuminate L.) PLDα (MaPLDα) was obtained by RT-PCR in this study. The MaPLDα gene contains a complete open reading frame (ORF) encoding a 92-kDa protein composed of 832 amino acid residues and possesses a characteristic C2 domain and two catalytic H×K×××D (abbr. HKD) motifs. The two HKD motifs are separated by 341 amino acid residues in the primary structure. Relatively higher PLD activity and expression of MaPLDα mRNA were detected in developing tissues compared to senescent or mature tissues in individual leaves, flower, stem, and fruit organs, respectively. The expression profile of PLDα mRNA in postharvest banana fruits at different temperatures was determined, and the MaPLDα mRNA reached the highest expression peak on day 5 at 25°C and on day 7 at 12°C. The results provide useful information for maintaining postharvest quality and extending the storage life of banana fruit

Analysis of Characteristic Quality Indexes of Gaoyou Duck Eggs

To explore the quality characteristics of Gaoyou duck eggs, metabolomics was used to analyze the quality indexes, basic nutritional indexes and small molecule metabolites. The results showed that the mass, egg shape index, egg yolk color, Haugh unit, egg white height, egg yolk index and crude protein content of Gaoyou duck eggs were higher than those of the other studied breeds. The contents of total amino acids, umami amino acids, branched-chain amino acids, total fatty acids and unsaturated fatty acids were higher, and the content of saturated fatty acids was lower, indicating that sensory quality parameters, amino acids and fatty acids can characterize the quality of Gaoyou duck eggs. The characteristic components of Gaoyou duck eggs were uncovered by metabolomic fingerprinting, principal component analysis (PCA), partial least squares discriminant analysis (PLS-DA), and hierarchical cluster analysis (HCA). Totally 252 compounds and 22 differential compounds were identified in egg yolk, and 184 compounds and 40 differential compounds in egg white. Among them, uridine 5’-monophosphate, guanosine 5’-monophosphate, and N-acetyl-D-glucosamine were the main differential nutrients, and arachidonic acid in egg yolk was the unique nutrient of Gaoyou duck eggs, while indole was not detected in the egg white of Gaoyou duck eggs