75 research outputs found

    Information extraction of +/-effect events to support opinion inference

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    Recently, work in NLP was initiated on a type of opinion inference that arises when opinions are expressed toward events which have positive or negative effects on entities, called +/-effect events. The ultimate goal is to develop a fully automatic system capable of recognizing inferred attitudes. To achieve its results, the inference system requires all instances of +/-effect events. Therefore, this dissertation focuses on +/-effect events to support opinion inference. To extract +/-effect events, we first need the list of +/-effect events. Due to significant sense ambiguity, our goal is to develop a sense-level rather than word-level lexicon. To handle sense-level information, WordNet is adopted. We adopt a graph-based method which is seeded by entries culled from FrameNet and then expanded by exploiting semantic relations in WordNet. We show that WordNet relations are useful for the polarity propagation in the graph model. In addition, to maximize the effectiveness of different types of information, we combine a graph-based method using WordNet relations and a standard classifier using gloss information. Further, we provide evidence that the model is an effective way to guide manual annotation to find +/-effect senses that are not in the seed set. To exploit the sense-level lexicons, we have to carry out word sense disambiguation. We present a knowledge-based +/-effect coarse-grained word sense disambiguation method based on selectional preferences via topic models. For more information, we first group senses, and then utilize topic models to model selectional preferences. Our experiments show that selectional preferences are helpful in our work. To support opinion inferences, we need to identify not only +/-effect events but also their affected entities automatically. Thus, we address both +/-effect event detection and affected entity identification. Since +/-effect events and their affected entities are closely related, instead of a pipeline system, we present a joint model to extract +/-effect events and their affected entities simultaneously. We demonstrate that our joint model is promising to extract +/-effect events and their affected entities jointly

    Damped Euler system with attractive Riesz interaction forces

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    We consider the barotropic Euler equations with pairwise attractive Riesz interactions and linear velocity damping in the periodic domain. We establish the global-in-time well-posedness theory for the system near an equilibrium state. We also analyze the large-time behavior of solutions showing the exponential rate of convergence toward the equilibrium state as time goes to infinity.Comment: 24 page

    Genetic Drivers of Heterogeneity in Type 2 Diabetes Pathophysiology

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    Type 2 diabetes (T2D) is a heterogeneous disease that develops through diverse pathophysiological processes1,2 and molecular mechanisms that are often specific to cell type3,4. Here, to characterize the genetic contribution to these processes across ancestry groups, we aggregate genome-wide association study data from 2,535,601 individuals (39.7% not of European ancestry), including 428,452 cases of T2D. We identify 1,289 independent association signals at genome-wide significance (P \u3c 5 × 10-8) that map to 611 loci, of which 145 loci are, to our knowledge, previously unreported. We define eight non-overlapping clusters of T2D signals that are characterized by distinct profiles of cardiometabolic trait associations. These clusters are differentially enriched for cell-type-specific regions of open chromatin, including pancreatic islets, adipocytes, endothelial cells and enteroendocrine cells. We build cluster-specific partitioned polygenic scores5 in a further 279,552 individuals of diverse ancestry, including 30,288 cases of T2D, and test their association with T2D-related vascular outcomes. Cluster-specific partitioned polygenic scores are associated with coronary artery disease, peripheral artery disease and end-stage diabetic nephropathy across ancestry groups, highlighting the importance of obesity-related processes in the development of vascular outcomes. Our findings show the value of integrating multi-ancestry genome-wide association study data with single-cell epigenomics to disentangle the aetiological heterogeneity that drives the development and progression of T2D. This might offer a route to optimize global access to genetically informed diabetes care

    Genetic drivers of heterogeneity in type 2 diabetes pathophysiology

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    Type 2 diabetes (T2D) is a heterogeneous disease that develops through diverse pathophysiological processes1,2 and molecular mechanisms that are often specific to cell type3,4. Here, to characterize the genetic contribution to these processes across ancestry groups, we aggregate genome-wide association study data from 2,535,601 individuals (39.7% not of European ancestry), including 428,452 cases of T2D. We identify 1,289 independent association signals at genome-wide significance (P &lt; 5 × 10-8) that map to 611 loci, of which 145 loci are, to our knowledge, previously unreported. We define eight non-overlapping clusters of T2D signals that are characterized by distinct profiles of cardiometabolic trait associations. These clusters are differentially enriched for cell-type-specific regions of open chromatin, including pancreatic islets, adipocytes, endothelial cells and enteroendocrine cells. We build cluster-specific partitioned polygenic scores5 in a further 279,552 individuals of diverse ancestry, including 30,288 cases of T2D, and test their association with T2D-related vascular outcomes. Cluster-specific partitioned polygenic scores are associated with coronary artery disease, peripheral artery disease and end-stage diabetic nephropathy across ancestry groups, highlighting the importance of obesity-related processes in the development of vascular outcomes. Our findings show the value of integrating multi-ancestry genome-wide association study data with single-cell epigenomics to disentangle the aetiological heterogeneity that drives the development and progression of T2D. This might offer a route to optimize global access to genetically informed diabetes care.</p

    Tiotropium Is Predicted to Be a Promising Drug for COVID-19 Through Transcriptome-Based Comprehensive Molecular Pathway Analysis

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    The coronavirus disease 2019 (COVID-19) outbreak caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) affects almost everyone in the world in many ways. We previously predicted antivirals (atazanavir, remdesivir and lopinavir/ritonavir) and non-antiviral drugs (tiotropium and rapamycin) that may inhibit the replication complex of SARS-CoV-2 using our molecular transformer–drug target interaction (MT–DTI) deep-learning-based drug–target affinity prediction model. In this study, we dissected molecular pathways upregulated in SARS-CoV-2-infected normal human bronchial epithelial (NHBE) cells by analyzing an RNA-seq data set with various bioinformatics approaches, such as gene ontology, protein–protein interaction-based network and gene set enrichment analyses. The results indicated that the SARS-CoV-2 infection strongly activates TNF and NFÎșB-signaling pathways through significant upregulation of the TNF, IL1B, IL6, IL8, NFKB1, NFKB2 and RELB genes. In addition to these pathways, lung fibrosis, keratinization/cornification, rheumatoid arthritis, and negative regulation of interferon-gamma production pathways were also significantly upregulated. We observed that these pathologic features of SARS-CoV-2 are similar to those observed in patients with chronic obstructive pulmonary disease (COPD). Intriguingly, tiotropium, as predicted by MT–DTI, is currently used as a therapeutic intervention in COPD patients. Treatment with tiotropium has been shown to improve pulmonary function by alleviating airway inflammation. Accordingly, a literature search summarized that tiotropium reduced expressions of IL1B, IL6, IL8, RELA, NFKB1 and TNF in vitro or in vivo, and many of them have been known to be deregulated in COPD patients. These results suggest that COVID-19 is similar to an acute mode of COPD caused by the SARS-CoV-2 infection, and therefore tiotropium may be effective for COVID-19 patients

    Determining Mood for a Blog by Combining Multiple Sources of Evidence

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    Mood classification for blogs is useful in helping user-to-agent interaction for a variety of applications involving the web, such as user modeling, recommendation systems, and user interface fields. It is challenging at the same time because of the diversity of the characteristics of bloggers, their experiences, and the way moods are expressed. As an attempt to handle the diversity, we combine multiple sources of evidence for a mood type. Support Vector Machine based Mood Classifier (SVMMC) is integrated with Mood Flow Analyzer (MFA) that incorporates commonsense knowledge obtained from the general public (i.e. ConceptNet), the Affective Norms English Words (ANEW) list, and mood transitions. In combining the two different approaches, we employ a statistically weighted voting scheme based on the Support Vector Machine (SVM). For evaluation, we have built a mood corpus consisting of manually annotated blogs, which amounts to over 4000 blogs. Our proposed method outperforms SVMMC by 5.68% in precision. The improvement is attributed to the strategy of choosing more trustable classification results in an interleaving fashion between the SVMMC and our MFA
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