Growth responses of Ulva prolifera to inorganic and organic nutrients: Implications for macroalgal blooms in the southern Yellow Sea, China

International audienceThe marine macrophyte Ulva prolifera is the dominant green-tide-forming seaweed in the southern Yellow Sea, China. Here we assessed, in the laboratory, the growth rate and nutrient uptake responses of U. prolifera to different nutrient treatments. The growth rates were enhanced in incubations with added organic and inorganic nitrogen [i.e. nitrate (NO3−), ammonium (NH4+), urea and glycine] and phosphorus [i.e. phosphate (PO43−), adenosine triphosphate (ATP) and glucose 6-phosphate (G-6-P)], relative to the control. The relative growth rates of U. prolifera were higher when enriched with dissolved organic nitrogen (urea and glycine) and phosphorus (ATP and G-6-P) than inorganic nitrogen (NO3− and NH4+) and phosphorus (PO43−). In contrast, the affinity was higher for inorganic than organic nutrients. Field data in the southern Yellow Sea showed significant inverse correlations between macroalgal biomass and dissolved organic nutrients. Our laboratory and field results indicated that organic nutrients such as urea, glycine and ATP, may contribute to the development of macroalgal blooms in the southern Yellow Sea

Augmenting Large Language Model Translators via Translation Memories

Using translation memories (TMs) as prompts is a promising approach to in-context learning of machine translation models. In this work, we take a step towards prompting large language models (LLMs) with TMs and making them better translators. We find that the ability of LLMs to ``understand'' prompts is indeed helpful for making better use of TMs. Experiments show that the results of a pre-trained LLM translator can be greatly improved by using high-quality TM-based prompts. These results are even comparable to those of the state-of-the-art NMT systems which have access to large-scale in-domain bilingual data and are well tuned on the downstream tasks.Comment: Accepted to Findings of ACL 202

High-quality de novo assembly of the Eucommia ulmoides haploid genome provides new insights into evolution and rubber biosynthesis

We report the acquisition of a high-quality haploid chromosome-scale genome assembly for the first time in a tree species, Eucommia ulmoides, which is known for its rubber biosynthesis and medicinal applications. The assembly was obtained by applying PacBio and Hi–C technologies to a haploid that we specifically generated. Compared to the initial genome release, this one has significantly improved assembly quality. The scaffold N50 (53.15 MB) increased 28-fold, and the repetitive sequence content (520 Mb) increased by 158.24 Mb, whereas the number of gaps decreased from 104,772 to 128. A total of 92.87% of the 26,001 predicted protein-coding genes identified with multiple strategies were anchored to the 17 chromosomes. A new whole-genome duplication event was superimposed on the earlier γ paleohexaploidization event, and the expansion of long terminal repeats contributed greatly to the evolution of the genome. The more primitive rubber biosynthesis of this species, as opposed to that in Hevea brasiliensis, relies on the methylerythritol-phosphate pathway rather than the mevalonate pathway to synthesize isoprenyl diphosphate, as the MEP pathway operates predominantly in trans-polyisoprene-containing leaves and central peels. Chlorogenic acid biosynthesis pathway enzymes were preferentially expressed in leaves rather than in bark. This assembly with higher sequence contiguity can foster not only studies on genome structure and evolution, gene mapping, epigenetic analysis and functional genomics but also efforts to improve E. ulmoides for industrial and medical uses through genetic engineering

Exploration of Macro-Micro Biomarkers for Dampness-Heat Syndrome Differentiation in Different Diseases

Increased attention is being paid to traditional Chinese medicine (TCM) as a complementary and alternative medicine to provide an effective approach for personalized diagnosis and clinical treatment. TMC performs treatment based on differentiation of TCM syndrome (ZHENG), which may identify special phenotypes by symptoms and signs of patients even if they are in different diseases. There has, however, been skepticism and criticism because syndrome classification only depends on observation, knowledge, and clinical experience of TCM practitioners, which lacks objectivity and repeatability. In order to transform syndrome classification into mainstream medicine, we introduce a macro-micro approach that combines symptoms, clinical indicators, and metabolites. The present paper explores the macro-micro biomarkers of dampness-heat syndrome in chronic hepatitis B and nonalcoholic fatty liver patients, which could provide the basis for developing a possible population-screening tool for selecting target individuals and creating an evaluation index for personalized treatment

Spatial-temporal distribution and transport flux of polycyclic aromatic hydrocarbons in a large hydropower reservoir of Southeast China: Implication for impoundment impacts

Abstract(#br)In order to investigate the impacts of dam-related water impoundment on the spatial-temporal variations and transport of anthropogenic organic pollutants, 15 priority polycyclic aromatic hydrocarbons (PAHs) were analyzed in water samples from the Shuikou Reservoir (SKR) of the Minjiang River. The SKR was formed after the construction of the Shuikou Dam, which is the largest hydropower station in Southeast China. The water samples were collected from the backwater zone of the SKR, in both the wet and dry seasons, corresponding to the drainage and impoundment periods of water flow, respectively. The concentrations of the dissolved PAHs in surface water from the wet season (average of 161 ± 97 ng L −1 ) were significantly higher (ANOVA, p < 0.01) than those from the dry season (average of 43 ± 21 ng L −1 ). PAH concentrations in the SKR decreased from upstream (industrialized cities) to downstream (rural towns or counties), indicating high PAH loads caused by intensive urbanization effects. The high proportions of 3-ring PAHs in the wet season were from local sources via surface runoff; while the elevated proportions of 4- to 6- ring PAHs in the dry season reflected atmospheric deposition emerged of these PAHs and/or volatilization of 3-ring PAHs enhanced. Molecular diagnostic ratios of PAH isomers in multimedium and principal component analysis indicated that PAH presence in the SKR was mainly attributed to pyrogenic origin. The isomeric ratios of fluoranthene to fluoranthene plus pyrene in the wet season were homogeneous, implying that there were continuous new inputs along the riverine runoff. However, these ratios showed spatial downward trend in the dry season, indicating continued degradation of PAHs occurred along the transport path during the impoundment period. The input and output fluxes of PAHs in the SKR were 5330 kg yr −1 and 2991 kg yr −1 , revealing that the reservoir retained contaminants after impoundment of the hydropower dam

Spatial-temporal distribution and transport flux of polycyclic aromatic hydrocarbons in a large hydropower reservoir of Southeast China: Implication for impoundment impacts.

In order to investigate the impacts of dam-related water impoundment on the spatial-temporal variations and transport of anthropogenic organic pollutants, 15 priority polycyclic aromatic hydrocarbons (PAHs) were analyzed in water samples from the Shuikou Reservoir (SKR) of the Minjiang River. The SKR was formed after the construction of the Shuikou Dam, which is the largest hydropower station in Southeast China. The water samples were collected from the backwater zone of the SKR, in both the wet and dry seasons, corresponding to the drainage and impoundment periods of water flow, respectively. The concentrations of the dissolved PAHs in surface water from the wet season (average of 161 ± 97 ng L-1) were significantly higher (ANOVA, p < 0.01) than those from the dry season (average of 43 ± 21 ng L-1). PAH concentrations in the SKR decreased from upstream (industrialized cities) to downstream (rural towns or counties), indicating high PAH loads caused by intensive urbanization effects. The high proportions of 3-ring PAHs in the wet season were from local sources via surface runoff; while the elevated proportions of 4- to 6- ring PAHs in the dry season reflected atmospheric deposition emerged of these PAHs and/or volatilization of 3-ring PAHs enhanced. Molecular diagnostic ratios of PAH isomers in multimedium and principal component analysis indicated that PAH presence in the SKR was mainly attributed to pyrogenic origin. The isomeric ratios of fluoranthene to fluoranthene plus pyrene in the wet season were homogeneous, implying that there were continuous new inputs along the riverine runoff. However, these ratios showed spatial downward trend in the dry season, indicating continued degradation of PAHs occurred along the transport path during the impoundment period. The input and output fluxes of PAHs in the SKR were 5330 kg yr-1 and 2991 kg yr-1, revealing that the reservoir retained contaminants after impoundment of the hydropower dam

Evaluation of the competence of an artificial intelligence-assisted colonoscopy system in clinical practice: A post hoc analysis

BackgroundArtificial intelligence-assisted colonoscopy (AIAC) has been proposed and validated in recent years, but the effectiveness of clinic application remains unclear since it was only validated in some clinical trials rather than normal conditions. In addition, previous clinical trials were mostly concerned with colorectal polyp identification, while fewer studies are focusing on adenoma identification and polyps size measurement. In this study, we validated the effectiveness of AIAC in the clinical environment and further investigated its capacity for adenoma identification and polyps size measurement.MethodsThe information of 174 continued patients who went for coloscopy in Chongqing Rongchang District People’s hospital with detected colon polyps was retrospectively collected, and their coloscopy images were divided into three validation datasets, polyps dataset, polyps/adenomas dataset (all containing narrow band image, NBI images), and polyp size measurement dataset (images with biopsy forceps and polyps) to assess the competence of the artificial intelligence system, and compare its diagnostic ability with endoscopists with different experiences.ResultsA total of 174 patients were included, and the sensitivity of the colorectal polyp recognition model was 99.40%, the accuracy of the colorectal adenoma diagnostic model was 93.06%, which was higher than that of endoscopists, and the mean absolute error of the polyp size measurement model was 0.62 mm and the mean relative error was 10.89%, which was lower than that of endoscopists.ConclusionArtificial intelligence-assisted model demonstrated higher competence compared with endoscopists and stable diagnosis ability in clinical use

High density lipoprotein promotes proliferation of adipose-derived stem cells via S1P1 receptor and Akt, ERK1/2 signal pathways

Introduction: Adipose-derived stem cells (ADSC) are non-hematopoietic mesenchymal stem cells that have shown great promise in their ability to differentiate into multiple cell lineages. Their ubiquitous nature and the ease of harvesting have attracted the attention of many researchers, and they pose as an ideal candidate for applications in regenerative medicine. Several reports have demonstrated that transplanting ADSC can promote repair of injured tissue and angiogenesis in animal models. Survival of these cells after transplant remains a key limiting factor for the success of ADSC transplantation. Circulating factors like High Density Lipoprotein (HDL) has been known to promote survival of other stems cells like bone marrow derived stem cells and endothelial progenitor cells, both by proliferation and by inhibiting cell apoptosis. The effect of HDL on transplanted adipose-derived stem cells in vivo is largely unknown. Methods: This study focused on exploring the effects of plasma HDL on ADSC and delineating the mechanisms involved in their proliferation after entering the bloodstream. Using the MTT and BrdU assays, we tested the effects of HDL on ADSC proliferation. We probed the downstream intracellular Akt and ERK1/2 signaling pathways and expression of cyclin proteins in ADSC using western blot. Results: Our study found that HDL promotes proliferation of ADSC, by binding to sphingosine-1-phosphate receptor-1(S1P1) on the cell membrane. This interaction led to activation of intracellular Akt and ERK1/2 signaling pathways, resulting in increased expression of cyclin D1 and cyclin E, and simultaneous reduction in expression of cyclin-dependent kinase inhibitors p21 and p27, therefore promoting cell cycle progression and cell proliferation. Conclusions: These studies raise the possibility that HDL may be a physiologic regulator of stem cells and increasing HDL concentrations may be valuable strategy to promote ADSC transplantation.&apos;973&apos; National ST Major Project [2011CB503900]; National Natural Science Foundation of China [81270321, 81170101, 81370235]; Natural Science Foundation of Beijing, China [7122106]SCI(E)[email protected]; [email protected]