Localization of leucocyte interferon gene in the q2.5 region of pig chromosomel by in situ hybridization

Using in situ hybridization and the random primer method to label the probe, we reduced the region of localization of leukocyte interferon gene on pig chromosome 1 from (q2.2 - q2.7) to q2.5.L’utilisation en hybridation in situ de la sonde correspondant au gène de l’interféron α, marquée par le système d’amorces oligonucléotidiques, a permis de réduire la zone de localisation de ce gène sur le chromosome 1 du porc de la région q2.2 - > q2.7 à la région q2.5

Rapid Communication: The Progesterone Receptor (PGR) Gene Maps to Porcine Chromosome 9p13-p11 by a Rodent-Porcine Somatic Cell Hybrid Panel

Genus and Species. Sus scrofa. Locus. Pig Progesterone Receptor ( PGR) gene. Source and Description of Primers. Oligonucleotide primers were designed from a partial pig PGR cDNA sequence (Genbank accession no. S49016) with inferred intron-exon boundary information from humans (Misrahi et al., 1993). The primers were designed to span the intron between exons 7 and 8 of the PGR gene

Comparative mapping of human chromosome 13 genes in the pig shows a similar gene arrangement

Previous comparative mapping between the human and pig genomes suggested complete conservation of human chromosome 13 (HSA13) to pig chromosome 11 (SSC11). The objectives of this study were comparative gene mapping of pig homologs of HSA13 genes and an examination of gene order within this conserved synteny group by physical assignment of each locus. A detailed HSA13 to SSC11 comparison was chosen since the comparative gene map is not well developed for these chromosomes and a rearranged gene order within conserved synteny groups was observed from the comparison between human chromosome 13 and bovine chromosome 12. Pig sequence tagged sites (STSs) for six HSA13 genes were developed and physically mapped using a somatic cell hybrid panel (SCHP) to SSC11 with 85–100% concordance. Fluorescent in situ hybridization (FISH) mapping also was applied to determine the gene order within each subchromosomal region. Results from this study increase the comparative information available on SSC11 and suggest the same gene order among examined loci on SSC11 and HSA13

Comparative mapping of human chromosome 3 genes in the pig shows different gene order

A comparative map of human chromosome 3 (HSA3) and pig chromosome 13 (SSC13) was constructed using physically assigned pig sequence tagged sites (STSs). Pig STS representing 11 HSA3 genes were developed and 10 pig STS were regionally mapped using a somatic cell hybrid panel (SCHP) to SSC13 with 80–100% concordance. Large-insert probes were obtained by screening a YAC library with primers for each STS. YACs were identified for DRD3, GAP43, PIT1, SI, and SST for fluorescent in situ hybridization (FISH) mapping. Single gene and bicolor FISH with each pairwise combination was used to further define gene order on SSC13. These data confrim chromosome painting results that showed HSA3 probes hybridize to a major portion of pig chromosome 13 and demonstrate extensive gene rearrangements within this conserved synteny group

Interphase chromosome positioning in in vitro porcine cells and ex vivo porcine tissues

Copyright @ 2012 The Authors. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and 85 reproduction in any medium, provided the original author and source are credited. The article was made available through the Brunel University Open Access Publishing Fund.BACKGROUND: In interphase nuclei of a wide range of species chromosomes are organised into their own specific locations termed territories. These chromosome territories are non-randomly positioned in nuclei which is believed to be related to a spatial aspect of regulatory control over gene expression. In this study we have adopted the pig as a model in which to study interphase chromosome positioning and follows on from other studies from our group of using pig cells and tissues to study interphase genome re-positioning during differentiation. The pig is an important model organism both economically and as a closely related species to study human disease models. This is why great efforts have been made to accomplish the full genome sequence in the last decade. RESULTS: This study has positioned most of the porcine chromosomes in in vitro cultured adult and embryonic fibroblasts, early passage stromal derived mesenchymal stem cells and lymphocytes. The study is further expanded to position four chromosomes in ex vivo tissue derived from pig kidney, lung and brain. CONCLUSIONS: It was concluded that porcine chromosomes are also non-randomly positioned within interphase nuclei with few major differences in chromosome position in interphase nuclei between different cell and tissue types. There were also no differences between preferred nuclear location of chromosomes in in vitro cultured cells as compared to cells in tissue sections. Using a number of analyses to ascertain by what criteria porcine chromosomes were positioned in interphase nuclei; we found a correlation with DNA content.This study is partly supported by Sygen International PLC

Comparative chromosome painting discloses homologous Segments in distantly related mammals

Comparative chromosome painting, termed ZOO-FISH, using DNA libraries from flow sorted human chromosomes 1,16,17 and X, and mouse chromosome 11 discloses the presence of syntenic groups in distantly related mammalian Orders ranging from primates (Homo sapiens), rodents (Mus musculus), even-toed ungulates (Muntiacus muntjak vaginalis and Muntiacus reevesi) and whales (Balaenoptera physalus). These mammalian Orders have evolved separately for 55-80 million years (Myr). We conclude that ZOO-FISH can be used to generate comparative chromosome maps of a large number of mammalian species

Characterization analysis and polymorphism detection of the porcine Myd88 gene

The myeloid differentiation primary response protein 88 (Myd88) is an essential adaptor protein, which mediates in all Toll-like receptor (TLR) members signal transduction, except for TLR3. In this study, the 4464 bp genomic sequence of porcine Myd88 was first isolated, whereupon tissue distribution, chromosome mapping and single nucleotide polymorphism (SNP) were analyzed. Our results revealed that porcine Myd88 gene, which was located at chromosome 13 linked with marker S0288 (distance = 40 cR; LOD = 8.66), was widely expressed in all the examined tissues. There were 16 potential SNPs in the isolated genome fragment. SNP 797T/C in the first intron was studied, with no significant association being found between the genotype and immune traits in pigs (p > 0.05). The porcine Myd88 protein contained both the death domain (DD) and the Toll/IL-1 receptor domain (TIR). Leu residues, essential for its structure, were the most abundant encountered in the DD. The TIR contained two conserved motifs which may play important roles in the Myd88 function