What to expect from dynamical modelling of cluster haloes II. Investigating dynamical state indicators with Random Forest

We investigate the importances of various dynamical features in predicting the dynamical state (DS) of galaxy clusters, based on the Random Forest (RF) machine learning approach. We use a large sample of galaxy clusters from the Three Hundred Project of hydrodynamical zoomed-in simulations, and construct dynamical features from the raw data as well as from the corresponding mock maps in the optical, X-ray, and Sunyaev-Zel'dovich (SZ) channels. Instead of relying on the impurity based feature importance of the RF algorithm, we directly use the out-of-bag (OOB) scores to evaluate the importances of individual features and different feature combinations. Among all the features studied, we find the virial ratio, $\eta$, to be the most important single feature. The features calculated directly from the simulations and in 3-dimensions carry more information on the DS than those constructed from the mock maps. Compared with the features based on X-ray or SZ maps, features related to the centroid positions are more important. Despite the large number of investigated features, a combination of up to three features of different types can already saturate the score of the prediction. Lastly, we show that the most sensitive feature $\eta$ is strongly correlated with the well-known half-mass bias in dynamical modelling. Without a selection in DS, cluster halos have an asymmetric distribution in $\eta$, corresponding to an overall positive half-mass bias. Our work provides a quantitative reference for selecting the best features to discriminate the DS of galaxy clusters in both simulations and observations.Comment: 14 pages, 9 figures, submitted to MNRA

whu-nercms at trecvid2021:instance search task

We will make a brief introduction of the experimental methods and results of the WHU-NERCMS in the TRECVID2021 in the paper. This year we participate in the automatic and interactive tasks of Instance Search (INS). For the automatic task, the retrieval target is divided into two parts, person retrieval, and action retrieval. We adopt a two-stage method including face detection and face recognition for person retrieval and two kinds of action detection methods consisting of three frame-based human-object interaction detection methods and two video-based general action detection methods for action retrieval. After that, the person retrieval results and action retrieval results are fused to initialize the result ranking lists. In addition, we make attempts to use complementary methods to further improve search performance. For interactive tasks, we test two different interaction strategies on the fusion results. We submit 4 runs for automatic and interactive tasks respectively. The introduction of each run is shown in Table 1. The official evaluations show that the proposed strategies rank 1st in both automatic and interactive tracks.Comment: 9 pages, 4 figure

Mechanistic insight into RET kinase inhibitors targeting the DFG-out conformation in RET-rearranged cancer

Oncogenic fusion events have been identified in a broad range of tumors. Among them, RET rearrangements represent distinct and potentially druggable targets that are recurrently found in lung adenocarcinomas. Here, we provide further evidence that current anti-RET drugs may not be potent enough to induce durable responses in such tumors. We report that potent inhibitors such as AD80 or ponatinib that stably bind in the DFG-out conformation of RET may overcome these limitations and selectively kill RET-rearranged tumors. Using chemical genomics in conjunction with phosphoproteomic analyses in RET-rearranged cells we identify the CCDC6-RETI788N mutation and drug-induced MAPK pathway reactivation as possible mechanisms, by which tumors may escape the activity of RET inhibitors. Our data provide mechanistic insight into the druggability of RET kinase fusions that may be of help for the development of effective therapies targeting such tumors

Finishing the euchromatic sequence of the human genome

The sequence of the human genome encodes the genetic instructions for human physiology, as well as rich information about human evolution. In 2001, the International Human Genome Sequencing Consortium reported a draft sequence of the euchromatic portion of the human genome. Since then, the international collaboration has worked to convert this draft into a genome sequence with high accuracy and nearly complete coverage. Here, we report the result of this finishing process. The current genome sequence (Build 35) contains 2.85 billion nucleotides interrupted by only 341 gaps. It covers ∼99% of the euchromatic genome and is accurate to an error rate of ∼1 event per 100,000 bases. Many of the remaining euchromatic gaps are associated with segmental duplications and will require focused work with new methods. The near-complete sequence, the first for a vertebrate, greatly improves the precision of biological analyses of the human genome including studies of gene number, birth and death. Notably, the human enome seems to encode only 20,000-25,000 protein-coding genes. The genome sequence reported here should serve as a firm foundation for biomedical research in the decades ahead

Low dose of protein A pretreatment can alleviate the inflammatory reaction and the bio-safety was evaluated in vivo

Background: Staphylococcal protein A (SPA) is a protein of Staphylococcus aureus. Up to now, there have been many studies on the biological activities of SPA. Some reported effects of SPA pretreatment on septic shock in mouse models but there is no study which reports the role of SPA pretreatment on the infected incision. Methods: According to count results, bacterial suspension was set at a density of ∼1.8 × 109 colony forming units/mL. BALB/c mice were anesthetized via intraperitoneal injection with pentobarbital sodium. A longitudinal skin incision was made on the medial side of the right thigh. The length of the incision was 5 mm, and the depth was ∼3 mm. The bacterial suspension was gradually dripped and embrocated onto the incision surface to make the wound infection model. Before making the wound infection model for 48 hours and 24 hours, mice were retreated with SPA via intraperitoneal injection. Rats were intraperitoneally injected with SPA 1 mg/kg and the control group was injected with sterile saline to evaluate the biological safety of the best pretreatment dose. Results: A 1-mL bacterial suspension can be utilized to make the wound infection model of BALB/c mouse lower limb. SPA pretreatment can reduce the inflammatory reactions in wound methicillin-resistant Staphylococcus aureus infection mouse model and the best pretreatment dose is 1 mg/kg. Intraperitoneal injection 1 mg/kg SPA does not destroy the functions of the organs. A 1-mg/kg SPA pretreatment can also reduce the inflammatory reactions in wound various bacterial infection mouse models. Conclusion: SPA pretreatment can effectively decrease the infected severity of a wound infected by various bacteria in a BALB/c mouse model. The best pretreatment dose is 1 mg/kg, and this dose does not damage organ function in rats up to a point

Data-Free Area Detection and Evaluation for Marine Satellite Data Products

The uncertainty verification of satellite ocean color products and the bias analysis of multiple data are both indispensable in the evaluation of ocean color products. Incidentally, ocean color products often have missing information that causes the methods mentioned above to be difficult to evaluate these data effectively. We propose an analysis and evaluation method based on data-free area. The objective of this study is to evaluate the quality of ocean color products with respect to information integrity and continuity. First, we use an improved Spectral Angle Mapper, also called ISAM. It can automatically obtain the optimal threshold value for each class of objects. Then, based on ISAM, we perform spectral information mining on first-level Yellow Sea and Bohai Sea data obtained from the Geostationary Ocean Color Imager (GOCI), Moderate Resolution Imaging Spectroradiometer (MODIS) and Ocean and Land Color Instrument (OLCI). In this manner, quantitative results of information related to data-free areas of ocean data products are obtained. The findings indicate that the product data of OLCI are optimal with respect to both completeness and continuity. GOCI and MODIS have striking similarities in their quantitative or visualization results for both evaluation metrics. Moreover, a concomitant phenomenon of ocean-covered objects is apparent in the data-free area with temporal and spatial distribution characteristics. The two characteristics are subsequently explored for further analysis. The evaluation method adopted in this study can help to enrich the content of ocean color product evaluation, facilitate the research of cloud detection algorithms and further understand the composition of the data-free regional information of marine data products. The method proposed in this study has a wide application value