Reproducing properties of MW dSphs as descendants of DM-free TDGs

The Milky Way (MW) dwarf spheroidal (dSph) satellites are known to be the most dark-matter (DM) dominated galaxies with estimates of dark to baryonic matter reaching even above one hundred. It comes from the assumption that dwarfs are dynamically supported by their observed velocity dispersions. However their spatial distributions around the MW is not at random and this could challenge their origin, previously assumed to be residues of primordial galaxies accreted by the MW potential. Here we show that alternatively, dSphs could be the residue of tidal dwarf galaxies (TDGs), which would have interacted with the Galactic hot gaseous halo and disk. TDGs are gas-rich and have been formed in a tidal tail produced during an ancient merger event at the M31 location, and expelled towards the MW. Our simulations show that low-mass TDGs are fragile to an interaction with the MW disk and halo hot gas. During the interaction, their stellar content is progressively driven out of equilibrium and strongly expands, leading to low surface brightness feature and mimicking high dynamical M/L ratios. Our modeling can reproduce the properties, including the kinematics, of classical MW dwarfs within the mass range of the Magellanic Clouds to Draco. An ancient gas-rich merger at the M31 location could then challenge the currently assumed high content of dark matter in dwarf galaxies. We propose a simple observational test with the coming GAIA mission, to follow their expected stellar expansion, which should not be observed within the current theoretical framework.Comment: 17 pages, 11 figures, accepted by the Monthly Notices of the Royal Astronomical Society (MNRAS

The vast thin plane of M31 co-rotating dwarfs: an additional fossil signature of the M31 merger and of its considerable impact in the whole Local Group

The recent discovery by Ibata et al. (2013) of a vast thin disk of satellites (VTDS) around M31 offers a new challenge for the understanding of the Local Group properties. This comes in addition to the unexpected proximity of the Magellanic Clouds (MCs) to the Milky Way (MW), and to another vast polar structure (VPOS), which is almost perpendicular to our Galaxy disk. We find that the VTDS plane is coinciding with several stellar, tidally-induced streams in the outskirts of M31, and, that its velocity distribution is consistent with that of the Giant Stream (GS). This is suggestive of a common physical mechanism, likely linked to merger tidal interactions, knowing that a similar argument may apply to the VPOS at the MW location. Furthermore, the VTDS is pointing towards the MW, being almost perpendicular to the MW disk, as the VPOS is. We compare these properties to the modelling of M31 as an ancient, gas-rich major merger, which has been successfully used to predict the M31 substructures and the GS origin. We find that without fine tuning, the induced tidal tails are lying in the VTDS plane, providing a single and common origin for many stellar streams and for the vast stellar structures surrounding both the MW and M31. The model also reproduces quite accurately positions and velocities of the VTDS dSphs. Our conjecture leads to a novel interpretation of the Local Group past history, as a gigantic tidal tail due to the M31 ancient merger is expected to send material towards the MW, including the MCs. Such a link between M31 and the MW is expected to be quite exceptional, though it may be in qualitative agreement with the reported rareness of MW-MCs systems in nearby galaxies.Comment: Accepted for publication in MNRAS, 8 pages, 3 figure

Evolution of Galaxy Luminosity Function and Luminosity Function by Density Environment at 0.03<z<0.5

Using galaxy sample observed by the BATC large-field multi-color sky survey and galaxy data of SDSS in the overlapped fields, we study the dependence of the restframe $r$-band galaxy luminosity function on redshift and on large-scale environment. The large-scale environment is defined by isodensity contour with density contrast \delta\rho/\rho. The data set is a composite sample of 69,671 galaxies with redshifts 0.03 < z < 0.5 and r < 21.5 mag. The redshifts are composed by three parts: 1) spectroscopic redshifts in SDSS for local and most luminous galaxies; 2) 20-color photometric redshifts derived from BATC and SDSS; 3) 5-color photometric redshifts in SDSS. We find that the faint-end slope \alpha steepens slightly from -1.21 at z ~ 0.06 to -1.35 at z ~ 0.4, which is the natural consequence of the hierarchical formation of galaxies. The luminosity function also differs with different environments. The value of \alpha changes from -1.21 at underdense regions to -1.37 at overdense regions and the corresponding M* brightens from -22.26 to -22.64. This suggests that the fraction of faint galaxies is larger in high density regions than in low density regions.Comment: 7 pages, 9 figures, accepted by Ap

Genome mining for anti-CRISPR operons using machine learning

Motivation: Encoded by (pro-)viruses, anti-CRISPR (Acr) proteins inhibit the CRISPR-Cas immune system of their prokaryotic hosts. As a result, Acr proteins can be employed to develop more controllable CRISPR-Cas genome editing tools. Recent studies revealed that known acr genes often coexist with other acr genes and with phage structural genes within the same operon. For example, we found that 47 of 98 known acr genes (or their homologs) co-exist in the same operons. None of the current Acr prediction tools have considered this important genomic context feature. We have developed a new software tool AOminer to facilitate the improved discovery of new Acrs by fully exploiting the genomic context of known acr genes and their homologs. Results: AOminer is the first machine learning based tool focused on the discovery of Acr operons (AOs). A two-state HMM (hidden Markov model) was trained to learn the conserved genomic context of operons that contain known acr genes or their homologs, and the learnt features could distinguish AOs and non-AOs. AOminer allows automated mining for potential AOs from query genomes or operons. AOminer outperformed all existing Acr prediction tools with an accuracy¼0.85. AOminer will facilitate the discovery of novel anti-CRISPR operons

Relations of diet and physical activity to bone mass and height in black and white adolescents

Because the development of healthy bodies during the years of growth has life-long health consequences, it is important to understand the early influences of diet and physical activity (PA). One way to generate hypotheses concerning such influences is to conduct cross-sectional studies of how diet and PA are related to different components of body composition. The subjects were 660 black and white adolescents. Total body bone mineral content (BMC) was measured with dual-energy X-ray absorptiometry; free-living diet and PA were assessed with 4–7 separate 24-h recalls. The main dietary variables investigated were: total energy intake, macronutrient distribution (%), dairy servings, vitamin D, and calcium. The main PA variables were hours of moderate PA (3–6 METs) and vigorous PA (>6 METs). BMC was higher in blacks than in whites (P<0.01) and it increased more in boys than in girls (age by sex interaction) as age increased (P<0.01). After adjustment for age, race and sex, higher levels of BMC were associated with higher levels of energy intake, dairy servings, calcium, vitamin D, and vigorous PA (all P 's<0.05). In the multivariable model, significant and independent proportions of the variance in BMC were explained by race, the age by sex interaction, calcium, and vigorous PA (all P 's<0.01). When height was used as the outcome variable, similar diet results were obtained; however, there was a sex by vigorous PA interaction, such that vigorous PA was associated with height only in the girls. These data are consistent with the hypothesis that the bone mass and height of growing youths are positively influenced by higher dietary intake of energy and dairy foods, along with sufficient amounts of vigorous PA. This hypothesis needs to be tested in randomized controlled trials

Differential Impact of Stress Reduction Programs upon Ambulatory Blood Pressure among African American Adolescents: Influences of Endothelin-1 Gene and Chronic Stress Exposure

Stress-activated gene × environment interactions may contribute to individual variability in blood pressure reductions from behavioral interventions. We investigated effects of endothelin-1 (ET-1) LYS198ASN SNP and discriminatory stress exposure upon impact of 12-week behavioral interventions upon ambulatory BP (ABP) among 162 prehypertensive African American adolescents. Following genotyping, completion of questionnaire battery, and 24-hour ABP monitoring, participants were randomized to health education control (HEC), life skills training (LST), or breathing awareness meditation (BAM). Postintervention ABP was obtained. Significant three-way interactions on ABP changes indicated that among ET-1 SNP carriers, the only group to show reductions was BAM from low chronic stress environments. Among ET-1 SNP noncarriers, under low chronic stress exposure, all approaches worked, especially BAM. Among high stress exposure noncarriers, only BAM resulted in reductions. If these preliminary findings are replicated via ancillary analyses of archival databases and then via efficacy trials, selection of behavioral prescriptions for prehypertensives will be edging closer to being guided by individual's underlying genetic and environmental factors incorporating the healthcare model of personalized preventive medicine

Color and Metallicity Distributions of M81 Globular Clusters

In this paper we present catalogs of photometric and spectroscopic data for M81 globular clusters (GCs). The catalogs include B- and V- photometric and reddening data of 95 GCs, and spectroscopic metallicities of 40 GCs in M81. Using these data, we make some statistical correlations. The results show that the distributions of intrinsic B and V colors and metallicities are bimodal, with metallicity peaks at [Fe/H]=-1.45 and -0.53, respectively as has been demonstrated for our Milky Way and M31. The relation between spectroscopic metallicity and intrinsic B and V color also exists as it does for the Milky Way and M31.Comment: Accepted for Publication in PASP, 9 pages, 6 figure

Homeobox transcription factor HbxA influences expression of over one thousand genes in the model fungus \u3ci\u3eAspergillus nidulans\u3c/i\u3e

In fungi, conserved homeobox-domain proteins are transcriptional regulators governing development. In Aspergillus species, several homeobox-domain transcription factor genes have been identified, among them, hbxA/hbx1. For instance, in the opportunistic human pathogen Aspergillus fumigatus, hbxA is involved in conidial production and germination, as well as virulence and secondary metabolism, including production of fumigaclavines, fumiquinazolines, and chaetominine. In the agriculturally important fungus Aspergillus flavus, disruption of hbx1 results in fluffy aconidial colonies unable to produce sclerotia. hbx1 also regulates production of aflatoxins, cyclopiazonic acid and aflatrem. Furthermore, transcriptome studies revealed that hbx1 has a broad effect on the A. flavus genome, including numerous genes involved in secondary metabolism. These studies underline the importance of the HbxA/Hbx1 regulator, not only in developmental processes but also in the biosynthesis of a broad number of fungal natural products, including potential medical drugs and mycotoxins. To gain further insight into the regulatory scope of HbxA in Aspergilli, we studied its role in the model fungus Aspergillus nidulans. Our present study of the A. nidulans hbxA-dependent transcriptome revealed that more than one thousand genes are differentially expressed when this regulator was not transcribed at wild-type levels, among them numerous transcription factors, including those involved in development as well as in secondary metabolism regulation. Furthermore, our metabolomics analyses revealed that production of several secondary metabolites, some of them associated with A. nidulans hbxA-dependent gene clusters, was also altered in deletion and overexpression hbxA strains compared to the wild type, including synthesis of nidulanins A, B and D, versicolorin A, sterigmatocystin, austinol, dehydroaustinol, and three unknown novel compounds

FTO variant rs9939609 is associated with body mass index and waist circumference, but not with energy intake or physical activity in European- and African-American youth

<p>Abstract</p> <p>Background</p> <p>Genome-wide association studies found common variants in the fat mass and obesity-associated (<it>FTO</it>) gene associated with adiposity in Caucasians and Asians but the association was not confirmed in African populations. Association of <it>FTO </it>variants with insulin resistance and energy intake showed inconsistent results in previous studies. This study aimed to assess the influence of <it>FTO </it>variant rs9939609 on adiposity, insulin resistance, energy intake and physical activity in European - (EA) and African-American (AA) youth.</p> <p>Methods</p> <p>We conducted a cross-sectional study in EA and AA youths. One thousand, nine hundred and seventy-eight youths (48.2% EAs, 47.1% male, mean age 16.5 years) had measures of anthropometry. Percent body fat (%BF) was measured by dual-energy X-ray absorptiometry, visceral adipose tissue (VAT) and subcutaneous abdominal adipose tissue (SAAT) by magnetic resonance imaging. Energy intake and physical activity were based on self report from up to 7 24-hour recalls. Physical activity was also measured by accelerometry.</p> <p>Results</p> <p><it>FTO </it>rs9939609 was significantly associated with body mass index (BMI) (<it>P </it>= 0.01), weight (<it>P </it>= 0.03) and waist circumference (<it>P </it>= 0.04), with per-allele effects of 0.4 kg/m², 1.3 kg and 0.8 cm, respectively. No significant association was found between rs9939609 and %BF, VAT, SAAT or insulin resistance (<it>P </it>> 0.05), or between rs9939609 and energy intake or vigorous physical activity (<it>P </it>> 0.05). No significant interactions of rs9939609 with ethnicity, gender, energy intake or physical activity were observed (<it>P </it>> 0.05).</p> <p>Conclusions</p> <p>The <it>FTO </it>variant rs9939609 is modestly associated with BMI and waist circumference, but not with energy intake or physical activity. Moreover, these effects were similar for EAs and AAs. Improved understanding of the effect of the <it>FTO </it>variant will offer new insights into the etiology of excess adiposity.</p